RNA id: XM_021606199.2


Basic Information

Item Value
RNA id XM_021606199.2
length 1951
RNA type mRNA
GC content 0.51
exon number 10
gene id slc14a2
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 32260346 ~ 32274147 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATAAAAACAGTGGTGGGAGTACAGCACAGCTTCACAGCAGCTGCCACACACAGCACCCTGCCCTACTGGAAACATATATGCCTGGACCACATCGCACAAAGGATATTCCCAAGAATATCTCCAGTTTCTATAGTGCCTTAACGCAAGAACTTGCATCCGCATTCCAGTCAAAGCAAGAGCAGCAGCCACTGATGGCCAACCCAGATCCAGAGGTGTCAGGGGGCAGGGAGCAGAAGGCGGCTCAGGGGGAAAACGCAGAGGCTGGGAAGTCTGCAGTCCCCACCTGCCAACAGAAGGCCAAGGCCcggctgctactgttactgtcctACATCTCAGGAGACATGGAGGTGTTTGCAGAGTGGATGAAAAAACAGTTCTTCCTACTCCAGCTGCTAGACTGGGTTCTCCGTGGTGCTGCCCAGGTCATGTTTGTCAACAATCCTCTGAGTGGCCTAGTGATCTTTGCTGGGCTGATCCTGCAGAACCGCTGGTGGGCTCTCAACGGCTTCGTGGGCACACTCTTCGCCACCATCTCTGCCCTCATACTGCAacagagcagGGGTGCGATTGCAGCGGGGCTGTATGGTTACAATGGGATCTTGGTGGGGCTGCTGATGGCCGTGTTCTCTAACGCTGGAGACTGGTACTGGTGGCTCATACTGCCCAACATCGTCATGTCTATGACCTGccctATAGTGTCCAGTGCGTTGGCGTCCATTAACAGTCGTTGGGACCTGCCAGTGTTCACTCTTCCCTTCAACATCCTGGTATGTCTCCACATGGTGGCTACTGGCCACTACAACCACCACTTCCCCCAAGTCCTCATCCAGCCGCGCACAGAACTAGCCAACATCACCTGGGCTGAGGTCAACGTAGCTAAGctgTTCACAGCAGTGCCAGTTGGTATAGGCCAGGTGTATGGGTGTGATAACCCCTGGACAGGAGGAATCTTCATGGTCGCTCTCTTCATTTCCTCTCCCATCACCTGTGCTCACGCTACCATTGGATCCGCAGTCGGCATGGTctcagGTCTGGCCCTGGCAGCTCCATTTGAGGCGATCTACTTTGGTCTGTGGGGGTATAACTGTGTTCTAGCCTGCATCGCTATTGGAGGGATGTTCTACGCTCTCACCTGGCAGGTACACCTGCTGGCAATCACCTGTGCTTTCTTCTGTGCATATCTGGGCTCAGCCATCGCTAATGTCATGTCCACATTTGGCCTGCCAGCCTGCACCTGGCCCTTCTGTCTCTCCGCCCTCACCTTCCTTCTGTTTACCACGGAAACCAACACCATATTCAAGCTGCCGCTGGCTAACGTGGCCTACCCAGAGAGGAACCTGCGCTTCTTCTGGAAGCTCCGAAAGAAGGAgaagctggagagagaggagaaggaaagagatgAGGAAAAGTGGAGGGTAAAGGAGCAGGAGCTGCTAGGTAACGATAAAGAGGTGCTGAGGATGGAGAGAATGGATGGCAAAGAGAAGGGTGATGGGATGGAAGGCAAGCAGATTAATAAAATGATGATTCGGGAGGAAGAGATGATGGAGGTGGCCTTGGGTGAGGTGAGCAGCATGGCAGAAAATGTCTGAGCTCATCAACAGACTCCAGATGTTTTACTATGTACATAGAGTAGCAGAGACTCAGGTGATGAAGGAcagatgggtgtgtgtgtttgtagacgGTGTCTGAATTTAGCgttatacatactgtatgtaaattatCTTATTGTTTATTACTTCTGAAAAATGCCCAAAGCTCAGGTAACTAGCCCTCAGGTAACTAGCCCTCAGGTAACTAGCACTCAGGTAACTAGCACTCAGGTAGGGCTACAGTAGGTCATTCCGGTGTATGGTATTATATCTAACTTTGCTATACAGTGGATATTACCTCAGTTATGCACTTTCATACTTACTTAGTTTGAGTTCTAATAAAAGTATATTTTTCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU564702 lncRNA downstream 9833 32246193 ~ 32250513 (-) True G497032
TU564689 lncRNA downstream 31953 32227029 ~ 32228393 (-) True G497021
TU564681 lncRNA downstream 56971 32201806 ~ 32203375 (-) True G497013
TU564658 lncRNA downstream 71239 32155680 ~ 32189107 (-) True G496993
TU564646 lncRNA downstream 125014 32132298 ~ 32135332 (-) True G496982
TU564720 lncRNA upstream 13377 32287511 ~ 32287804 (-) True G497050
TU564730 lncRNA upstream 23120 32297254 ~ 32375937 (-) True G497060
TU564701 lncRNA upstream 46431 32320565 ~ 32324514 (-) False setbp1
TU564745 lncRNA upstream 52548 32326682 ~ 32326966 (-) True G497075
TU564703 lncRNA upstream 92498 32366632 ~ 32378373 (-) True setbp1
XM_021604983.2 mRNA downstream 179580 32074123 ~ 32080766 (-) True LOC110525023
XM_036979908.1 mRNA downstream 188499 32049187 ~ 32071847 (-) False epg5
XM_036979909.1 mRNA downstream 188499 32049187 ~ 32071847 (-) False epg5
XM_036979910.1 mRNA downstream 188499 32049187 ~ 32071847 (-) True epg5
XM_036979911.1 mRNA downstream 188586 32049187 ~ 32071760 (-) False epg5
XM_036979922.1 mRNA upstream 46361 32320495 ~ 32378525 (-) False setbp1
XR_005052065.1 mRNA upstream 46361 32320495 ~ 32378525 (-) False setbp1
XM_021606203.2 mRNA upstream 195178 32469312 ~ 32482950 (-) True thbs4a
XM_036979929.1 mRNA upstream 234546 32508680 ~ 32520900 (-) False LOC110526888
XM_021606209.2 mRNA upstream 405903 32680037 ~ 32682898 (-) False LOC110525784
TU564492 other downstream 367697 31843463 ~ 31892649 (-) True G496851
TU564405 other downstream 588419 31670978 ~ 31671927 (-) True G496777
TU564400 other downstream 598728 31661393 ~ 31661618 (-) True G496772
TU563022 other downstream 1684773 30575118 ~ 30575573 (-) True G495560
TU563013 other downstream 1710896 30545402 ~ 30549450 (-) True G495554
TU565305 other upstream 405908 32680042 ~ 32682847 (-) True LOC110525784
TU566350 other upstream 1053373 33327507 ~ 33330504 (-) True G498484
TU566347 other upstream 1058516 33332650 ~ 33336780 (-) True LOC110525812
TU566881 other upstream 1766225 34040359 ~ 34041174 (-) True G498960
TU569190 other upstream 3491232 35765366 ~ 35767929 (-) True G501142

Expression Profile