RNA id: TU564689


Basic Information

Item Value
RNA id TU564689
length 1365
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G497021
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 32227029 ~ 32228393 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tattctgggaaaaaaaacatgtatttaatccatttttaatttaggctgtaacacaaaatgtggaatacgtcaaggggtatgaatactatctgaaggcactgtacttctccAACAGCTTTTTCTGTTTATTTCCAGAACAAGTATCAGGTCAGCACCATCCACTTGTTTCCAGGCTATTGCCAAGACAACAGAGGAGAGATTCTGAGGTTCTCATtgcctctccatccatccctccatccatgaTTCAAGCAATGTGCATGCATGATAGGTCTGTTTTTTGAGTAAACCAACACTCAGAAATTCAGCAAAATGAAAAACATAGATATGTGTACAACATGtttacacacatacagttgaagtcggaagtttacatacaccttagccaaatacatttaaactaagtttttccacaattcctgacagttaatcctagtaaaaattcactgtctcaccactttattttaagattgtgaaatatcagaataatagtagagagaatgatttatttcagcttttatttctttcaccacattcccagtgggtcagaggtttacatgcactcaattagtattttgtagcattgcctttaaattgttgaacttgggtcaaacgttttgggtagccttccacaaacttcctacaataagttgggtgaaatttggtccattcctcctgacagagctggtgtaactgagtcaggtttgtaggtctccttgctctcacaagatttttcagttctgcccacaaatgttctataggattgaggtcagggctttgtgatggccactcatataccttgactttgttgtccttaagccatttttccacaactttggaagtatgcttggggtcattgtccatttggaagacccatttgtgaccaagcttcctgactgatgtcttgagaggttgcttcaatatatccacatcatttcccaccgtgtttcacggttgggatggtgttctttggcttacaagcctccccctttttactccaaacataacgatggtcattattgccaaacagttatatttttgtttgatcagaccagaggacatttctccaaaaagtacgatctttgtccccatgtgcagttgcaaaccgtaacctggcttttttatggcggttttggagcagtggcttcttccttgctgagcgacctttcaggttatgtcgatataggactcattttactgtggatatagatacttttatacctatttcctccagcatcttcaaggtcctttttctgtttttctgggattgatttgcacttttcgcaccaaagtaaagTACTTAATCtctagaacgcgtctccttcctgagcagtatgacggctgcgtggtcccatggtgtttatactt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU564681 lncRNA downstream 23654 32201806 ~ 32203375 (-) True G497013
TU564658 lncRNA downstream 37922 32155680 ~ 32189107 (-) True G496993
TU564646 lncRNA downstream 91697 32132298 ~ 32135332 (-) True G496982
TU564623 lncRNA downstream 124789 32101963 ~ 32102240 (-) True G496966
TU564622 lncRNA downstream 126085 32100738 ~ 32100944 (-) True G496965
TU564702 lncRNA upstream 17800 32246193 ~ 32250513 (-) True G497032
TU564720 lncRNA upstream 59118 32287511 ~ 32287804 (-) True G497050
TU564730 lncRNA upstream 68861 32297254 ~ 32375937 (-) True G497060
TU564701 lncRNA upstream 92172 32320565 ~ 32324514 (-) False setbp1
TU564745 lncRNA upstream 98289 32326682 ~ 32326966 (-) True G497075
XM_021604983.2 mRNA downstream 146263 32074123 ~ 32080766 (-) True LOC110525023
XM_036979908.1 mRNA downstream 155182 32049187 ~ 32071847 (-) False epg5
XM_036979909.1 mRNA downstream 155182 32049187 ~ 32071847 (-) False epg5
XM_036979910.1 mRNA downstream 155182 32049187 ~ 32071847 (-) True epg5
XM_036979911.1 mRNA downstream 155269 32049187 ~ 32071760 (-) False epg5
XM_021606199.2 mRNA upstream 31953 32260346 ~ 32274134 (-) False slc14a2
XM_021606200.2 mRNA upstream 31953 32260346 ~ 32274147 (-) True slc14a2
XM_036979922.1 mRNA upstream 92102 32320495 ~ 32378525 (-) False setbp1
XR_005052065.1 mRNA upstream 92102 32320495 ~ 32378525 (-) False setbp1
XM_021606203.2 mRNA upstream 240919 32469312 ~ 32482950 (-) True thbs4a
TU564492 other downstream 334380 31843463 ~ 31892649 (-) True G496851
TU564405 other downstream 555102 31670978 ~ 31671927 (-) True G496777
TU564400 other downstream 565411 31661393 ~ 31661618 (-) True G496772
TU563022 other downstream 1651456 30575118 ~ 30575573 (-) True G495560
TU563013 other downstream 1677579 30545402 ~ 30549450 (-) True G495554
TU565305 other upstream 451649 32680042 ~ 32682847 (-) True LOC110525784
TU566350 other upstream 1099114 33327507 ~ 33330504 (-) True G498484
TU566347 other upstream 1104257 33332650 ~ 33336780 (-) True LOC110525812
TU566881 other upstream 1811966 34040359 ~ 34041174 (-) True G498960
TU569190 other upstream 3536973 35765366 ~ 35767929 (-) True G501142

Expression Profile