RNA id: XM_021604983.2


Basic Information

Item Value
RNA id XM_021604983.2
length 1935
RNA type mRNA
GC content 0.47
exon number 6
gene id LOC110525023
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 32074123 ~ 32080766 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaagaaagaggagcggggaggaggagagaaaaagggggagtTGAGTTAAGGGGAAGTGCAGTCTTTATCCTCTCATTTAAAAAAGTATTGAGTGGAGTTTCGTTTGGAGTAGTTTCCCACTGCTTGCTGCGCTCTCCATGGAACATGGTTTGAACTAGACTGAGCGTGTGTGCAGGAAGACTGAGATTGAAGAGGATGAGCCAAGTTTGGGGTTCTCCATACGATAATACGATGTCACACCTTCTGTCCCCAAGTGACTTCGGTAAAAGCCTCAAGGACTtgAACATTGTGGCCATGTTGCATAACTTTTGGGAGCAGAAGCAGGTGGAACAGGTCAAGGGGTCCGACAGCCAATCAGAGGACTCGGTGAAAGGCTCTGCCAGCCAATCAGAGGGCTTGTTGTTGTATGAGTCTGCCCCTTCCCCAAGACCCCCTTACATCTACTACGTCACTCTGCCTGGAGGAAGCTGCTTTGGAAACTATAAGGAGTGTGAGACCCAGGCGGAAGCTCGTAGGGATGCGGCACGTGTCGCTCTGATGAACTCTCTAGTGAACGAGCTGCCGTCTAGACGAATCACTCCTCTGTTCATCACACACAGCCTGCAGGAGGCTGCTTCAGCCAGCACCGTCTCTGTGGAGGATGCCTGTGATCCTAGCACCAGTTTGGGAGCCTATTGTCTCCTGCTCCAGTCATACACTGGCAGAACCATGTTGGAGTTCCAGgagggGATGACAGTGTTTCAGTTGTTACACTGGAACGGGACGTTGAAGATTCTAAGGGAAAGACAGTGTTCCCGCCAGAATGTGATTGGTTATTACTTGCAGCGGGGACTGGATGCCAGCATGCGCAGCAGCATGGCTCTGGATTGGCTGGGCAGGGAGCGGCAGACGCCAAGGCAGCTGAGGATGGAGCTACGAGCAGCACAGAGGGAACTGGACGTGGCTAGGCGTCATGGCAATGAACTCCGCTTCTACAAGGAGAAAACAGAGATCCTTAGCCTGGCACTGAGTCAAGAATTCACACACCaaccacacacagatatacacggACCACACACAGATTCACAAGAATCGCCTGAACCACACAATCACCACCAATGAgtcgcacatacacacacaaactacatgAACCACCTGAACCACACATAAACTATGAACCATCATCTATCCAGACACAGCATCTGATCCACACATGAAACCCTGAACCACCATACATACACCCAGCTGAATTAGATGAGAACAACAGATGCAGTCTTCATGTACTAGTTGGAACTAGAAAACTCATCCCAACTAGCATGTAAACAGTGGCAAGAGAAAAGAGGTGCTTCATCAAGAGAGACTGAGCAGGTGACTAGGTCAAAGGTCACCATTGACACTGCCAGGCTACCTTCTGTCAAATTCAAGACACAGCTGAGACAGCTGACTGCGGTGTCTTCAATGAGTTTTAAAAGGGAATGCGAAATATTTGTGTACGTTTTAAATAAATACTTTGTCTGTCTGCTATATAATTATAGAACATTTTTCCAAatagttttcattgggaaggcagataaagAGTTTTTTATAAAAAGAAAAGCAATCACTTGTGCGTGTGAAAACACCAAATCCAACTCATTACTCCACGTGCTTAATTacatcacttttgttttgagccgacttGACCTTGGGCTTTGAACAGTGCACCAGGGTGGCTACCTGCACTGAACAATGCACAGTGGTTCGCTATACCAGGGCTATTCATGTCACAGTTAGAGCAGCAatactgtttcctccagcatgttGTTTCAAGACCAAAGCGAAAGTAATATAACGTTTGGGAACACACAAGTTATGTTCTTGATAATCACAGATAGatttaactacactatatatgcaaaagtatgtggacacccattcaaatgagtgaatttggctatttcagccataggcctaccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU564588 lncRNA downstream 49393 32023928 ~ 32024730 (-) True G496932
TU564566 lncRNA downstream 78624 31995276 ~ 31995499 (-) True G496920
TU564565 lncRNA downstream 79440 31994458 ~ 31994683 (-) True G496919
TU564429 lncRNA downstream 314668 31759147 ~ 31759455 (-) True G496801
TU564417 lncRNA downstream 369078 31704664 ~ 31705045 (-) True G496789
TU564607 lncRNA upstream 2121 32082887 ~ 32083103 (-) True G496950
TU564613 lncRNA upstream 12682 32093448 ~ 32093762 (-) True G496956
TU564614 lncRNA upstream 13714 32094480 ~ 32094720 (-) True G496957
TU564617 lncRNA upstream 16673 32097439 ~ 32097682 (-) True G496960
TU564621 lncRNA upstream 19509 32100275 ~ 32100560 (-) True G496964
XM_036979908.1 mRNA downstream 2276 32049187 ~ 32071847 (-) False epg5
XM_036979909.1 mRNA downstream 2276 32049187 ~ 32071847 (-) False epg5
XM_036979910.1 mRNA downstream 2276 32049187 ~ 32071847 (-) True epg5
XM_036979911.1 mRNA downstream 2363 32049187 ~ 32071760 (-) False epg5
XM_036979913.1 mRNA downstream 40453 32021741 ~ 32033670 (-) False LOC110517556
XM_021606199.2 mRNA upstream 179580 32260346 ~ 32274134 (-) False slc14a2
XM_021606200.2 mRNA upstream 179580 32260346 ~ 32274147 (-) True slc14a2
XM_036979922.1 mRNA upstream 239729 32320495 ~ 32378525 (-) False setbp1
XR_005052065.1 mRNA upstream 239729 32320495 ~ 32378525 (-) False setbp1
XM_021606203.2 mRNA upstream 388546 32469312 ~ 32482950 (-) True thbs4a
TU564492 other downstream 181474 31843463 ~ 31892649 (-) True G496851
TU564405 other downstream 402196 31670978 ~ 31671927 (-) True G496777
TU564400 other downstream 412505 31661393 ~ 31661618 (-) True G496772
TU563022 other downstream 1498550 30575118 ~ 30575573 (-) True G495560
TU563013 other downstream 1524673 30545402 ~ 30549450 (-) True G495554
TU565305 other upstream 599276 32680042 ~ 32682847 (-) True LOC110525784
TU566350 other upstream 1246741 33327507 ~ 33330504 (-) True G498484
TU566347 other upstream 1251884 33332650 ~ 33336780 (-) True LOC110525812
TU566881 other upstream 1959593 34040359 ~ 34041174 (-) True G498960
TU569190 other upstream 3684600 35765366 ~ 35767929 (-) True G501142

Expression Profile