thbs4a (LOC106585023)


Basic Information

Item Value
gene id thbs4a
gene name LOC106585023
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 32469312 ~ 32482950 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021606203.2
AGGAATGCAGGAACACACCCCTCTACTTTAAAGTCTGGCCCCTTTAAAAAAGCCCGTCTGTAGCCACAGGAGAATCTCCCCACTGCTACTGGGACTCTGCTTTCAACATCTGTCTGTCAGTTTGTCAGTCTGTCTATCAATCAGTCAGCACCAGGGGTATTCTAAATAGATAGCTGCTGTATTGATCCCTGTCTGTAGGACCAGGTGTACTGTGGACTAGTCGTGACGGTGACCCAGCCTGGGCTCTCAGGACTGGTTTGTGCTGAAGGCTGAAGACTAGGAAGTGTGAGGAtgggggtgtggatcagaaaagtGGTCCTCTCTCTGCTGATGCTACAACTGGCCACGACTGTCACAGCACAAGGCATTGTGTACGACCTGCTGGTGTCTCCAGACTGCCTGCCTGACCTGACGCAGGGAGGGCTGAAGAATAAAGGTCTGGATGaggccttcctcctctcctccttcaggctccATAGCAAGtccccctctcatctctacaGCATCATCAACCCCAGGGACAACAGCAAGTACCTGGAGTTCACCCTGCAGGCCAAACTCAACAAGGTGACGATCCGTTACCAGAAGACTGATGGTAGGGCTGGCACCACCAGTTTTAGCCACCCCTCTCTGGCGGACGGCAAGGAGCATCATGTGATGATCCATGCCAGCGGTCTGCAGAGAGGACCAGGTCGTATGGCGGTCTACGTAGACTGTAGACTGGCTCACACTGTGGACGAGCTGCCTGCTGCCTTCGGGTCGCTGACACCTGGACACAACAAGGTGGCGCTTAGGACCCTGCAGCCCACCGGGCAGGATGAGTTGACGGACCTGAAACTGGTGATAGAGGACACGTTAGATAACGTCGCTACGCTCCAGGACTGCAGCATACAGCAGAGCGAGTCTCTGGGTACTATTCAGCTACTGGGCCTCCAGGCAGGCGGACAGGATCCGTCTCAGATGTTAGAGCTCCACAAGATGATGTCAGAGATGAAGAACCTGCTCCTCCAGCAGATTAAGGAGACCACATTCCTCAGAAACACCATCTCAGAGTGTCTGGCATGTGgtctggGTGGCAACATGGCGTCAGGCCCAGGTACAGGTCCACGGTCAGGCCCGTCCAAGTGTAGTCCAGGTATGTGTTTCAATCAGGACATGTGTATCCCGGCCGAGGGAGGACGCTTCACCTGCGCCCCCTGCCCCGACGGATACACTGGAGACGGAGTTCACTGTGATGACGTGAACGAGtgccAGTTTAACCCCTGCTTCCCCGGTGTGAGGTGTGTGAACACAGCTCCTGGGTTCCGCTGTGAGAGATGCCCTCTGGGATACACTGGTCTTGAGATCAACGGAGTGGGAGTGTCCTACGCACAGTCCCACAAACAGGTGTGTGATGACATAGATGAATGCCAGGGTCCTCCTGACAACGGAGGCTGCACCGCCAACTCTCACTGCCACAACACCAGGGGTTCATTCCGTTGTGGGGAGTGTAAGAGTGGCTTCTCTGGGGACCAGGTGAGCGGCTGCAGTGGTGGGAGGCTCTGTGGGAATGGCCAGCCCAACCCCTGTGACAGCAATGCACAGTGTGTAGTGGAGAGAGACGGGAGTGTTAGCTGCgagTGTGACATAGGGTGGGCAGGTAATGGCTATGTGTGTGGGAAGGACACAGACATCGATGCTTACCCAGACGACAAGCTAAGGTGCAGGGACAACAACTGTAAGAAGGACAACTGTATGTTTGTTCCTAACTCTGGCCAAGAGGACGCAGACAGGGACGGGCTCGGGGACGCCTGTGATGATGACGCTGATAGCGACGGCATCGTTAACATAGAGGATAACTGTTGGCTGCATCCTAACGTGAACCAGAAGAACAGCGATAAGGATCTCCATGGCGACGCGTGTGACAACTGCTTGACGACGGAGAACCCTGATCAACGAGACACGGACAAGGACGGGCTAGGCGATGACTGTGACGATGACATGGatggagacgGCCTGAAGAACATTCTGGATAACTGCCAGCGTGTGGCCAACCTagaccagagggacagagacaacgATGGGGTGGGAGACGCCTGTGACAGCTGTCCTGACATGGTCAACCCCAACCAGTCAGATGTTGATGATGATCTTGTAGGAGACACATGTGACACCAACATAGACAGTGATGGGGACGGTCACCAGAACACTAAGGACAACTGTCCTACAGTCATCAACTCCTCCCAGCTGGACACAGATAAGGACGGACAGGGAGACGAGTGTGACGATGACGATGACAACGACGGTATCCTGGACCAAGCAGACAACTGCAGACTGGTGGTCAACCCTGACCAGACAGATGAGGACAatgACGGCGTGGGTGATGCGTGTGCAGGGGACTTTGACCAGGACAAGGTGATTGACAGGATAGACAACTGTCCAGAGAATGCTGAGGTCACCCTGACAGACTTCAGAGCCTATCAGACGGTGGTACTGGACCCTGAGGGTGACGCCCAGATTGATCCCAACTGGGTGGTTCTCAACCAGgGTATGGAGATAGTCCAGACTATGAACTCTGACCCTGGCCTCGCTGTAGgcTACACAGCATTCAGTGGGGTGGACTTTGAGGGGACGTTCCACGTGAACACGATGACTGATGATGACTATGCAGGCTTCATCTTCGGCTACCAGGACTCCTCCTCCTTCTACGTGGTCATGTGGAAACAGACTGAGCAGACCTACTGGCAGGCTGTACCCTTCAGAGCTGTGGCTGAGCCTGGCATACAGCTCAAGgcTGTGAAGTCTAAGACAGGTCCAGGGGAGTATCTGAGGAACTCCCTGTGGCATACAGGAGACACCAACGACCAGGTACGCCTGCTGTGGAAGGACAAGAGGAACGTGGGTTGGAAGGACAAGGTGTCCTACCGCtggtatctacagcacagaccaCAGGTTGGATACATCAGGGCGCGTTTCTATGAGGGTCCCAACCTGGTAGCAGACTCTGGGGTGAAGATAGACAACAGTATGCGAGGAGGAAGACTGGGAGTCTTCTGTTTCTCCCAGGAAAACATCATCTGGTCCAACCTCAAGTACCGCTGCAATGACACCATCCCTGAAGATTACCAGGAGTACAGTGCCCAGAACACTGAATAAACACACCGAGcgtggaagaggagagaaggaacagAGAAGAGATATTGGGAGGGGGTGTTAGAGGACAGAAAAATGAGGatgggacagagaagagagggggagaaagagaggaagagggaaaaggaggagagaggagatcgGTGGGGCATTATGAGGAGCAAGGCTTTTAAACGGGCTTTCCACAAGCAATCATCCCTTTTATAAAAGCATTATTATTACTGCTAGACTTTTGCCTGGTATGAAGACTGACTCATCAGGGCAACAGACTTCCAGACATGACTTGTTAATGCTGTGCCTACACacgctatactgtactgtacatgtggaATTGGTTCAACTAAAAGACTGATGTAGATTGTAGTGAACCTGTATATGTCTACTATCTGAGGTGAGGGTTATTGTATctaggggttcaaactgtagttAGGGTCTCTCCTATTTCTGCCATTGGAGGAAAACAAAGACAAGGGAAATAGATGAAGGAGCTGGTGTTGACTGCTCTTACATTAAAACAACCGATGTCCATCATACGTTACATTCAATAGATGTCATTATTTGTTCAGTTAATCTATGAATAAATATTCTGAGCATTTGGTAAAACGC

Function

NR:

description
thrombospondin-4-B-like

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0005576 extracellular region cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021606203.2 True 3738 mRNA 0.53 22 32469312 32482950

Neighbor

gene id symbol gene type direction distance location
setbp1 setbp1 coding downstream 90787 32320495 ~ 32378525 (-)
slc14a2 LOC106585019 coding downstream 195165 32260346 ~ 32274147 (-)
LOC110525023 NA coding downstream 388546 32074123 ~ 32080766 (-)
epg5 epg5 coding downstream 397465 32049187 ~ 32071847 (-)
LOC110517556 dnajb5 coding downstream 435642 32021741 ~ 32033670 (-)
LOC110526888 LOC106585027 coding upstream 25730 32508680 ~ 32520900 (-)
LOC110525784 LOC106585031 coding upstream 197087 32680037 ~ 32682899 (-)
LOC110525785 LOC106585030 coding upstream 207757 32690707 ~ 32730676 (-)
LOC110525787 LOC106585035 coding upstream 267715 32750665 ~ 32759951 (-)
LOC110525788 LOC106585037 coding upstream 400975 32883925 ~ 32924410 (-)
G497428 NA non-coding downstream 58131 32410937 ~ 32411181 (-)
G497427 NA non-coding downstream 58417 32410590 ~ 32410895 (-)
G497116 NA non-coding downstream 79551 32389540 ~ 32389761 (-)
G497112 NA non-coding downstream 80840 32388216 ~ 32388472 (-)
G497518 NA non-coding upstream 105118 32588068 ~ 32612518 (-)
G497573 LOC106585028 non-coding upstream 175292 32658242 ~ 32663253 (-)
G497663 NA non-coding upstream 342907 32825857 ~ 32826944 (-)
G497698 NA non-coding upstream 444359 32927309 ~ 32927532 (-)
G496851 NA other downstream 576663 31843463 ~ 31892649 (-)
G496777 NA other downstream 797385 31670978 ~ 31671927 (-)
G496772 NA other downstream 807694 31661393 ~ 31661618 (-)
G495560 NA other downstream 1893739 30575118 ~ 30575573 (-)
G495554 NA other downstream 1919862 30545402 ~ 30549450 (-)
G498484 rpl6 other upstream 844557 33327507 ~ 33330504 (-)
LOC110525812 LOC103397138 other upstream 849700 33332650 ~ 33336818 (-)
G498960 NA other upstream 1557409 34040359 ~ 34041174 (-)
G501142 NA other upstream 3282416 35765366 ~ 35767929 (-)

Expression


Co-expression Network