G497573 (LOC106585028)


Basic Information

Item Value
gene id G497573
gene name LOC106585028
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 32658242 ~ 32663253 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU565297
TGAGGTCGCTGGCAGTGATGGAGTTGAGCAGGCTGAGCTGCTGCTCTGTGGTGGGCTccatcctcacccctcctcctccgcctGAGCACACAGAGGAGGAGCTGTCTACTGCCAGGCCCTCCGCCTCGTCCACCAGCCGGTCCATCAGGTCCGTTACACCAGGATAGCTGCTATACTTCTTCTTGCCAAAGCGATTCTGCTGGACAAAGAAATCAAAGCGCTCCGACTTCTTCCACATGTAGTAAAAGGCCACACATTCAGCTACCGTCCGTGTCTTAACCTTGTGCTTCTGTATGAGGTGAAAGTTCTTATCGTATAGCTGTAGTGCATGTTCAAAGTTTCTGCATTCATCTTCAGACCACGGTGGGGATTCCTCCTGTGATGAGTTCACATTACTGCAATACCTCTCCAGTGCTTCAGGGGTATTGTAGTTACATTTCACAAGCTCATACAGAGCCTGCTCATTGTCGCTCACATGAGCCCCTGCCATGTCACTTCCTGTCCTCTCATCGGTTGCCCGTGACGACGCCTCACACAGGAAGTCCCTGACCTTGCTTTCTGACAACACGTCCGGGCTCCATAGCAACTGGTCATCATCTTCGTAAACTTCATGAAAATGGCAGATGAGAATCACAACGTTAGACACTCTGTGCAATGTTACACTTGGAAACACTGCTAAATGTCTGACTGTCAAGTGCAACGGGTTTATGGGTTAACCTCTTGAGAAAGCCTGCACTCACCCTTATCGTCGCCATAGTGACAGAGGTGGGTGGGGACCTCTGCTTGGTGCTGCGACCCCACCATTATTTCCTGTGAAATGCAAATACAAAACAGAGTTACCCCCAGAACATGCAGCCCCATGTTTCTACCATCAGTAAATGCAGGTCTAGAATCATTTAACCGAATAACGTTACTAAACAACCTTAACCATTGAAAAATAAAAGAACTGACCTCCAATCTGTGCTTATGGGAAACTTAATCCTGTATCTTCTTCAATCAAGTCACTTTTAAAAGGAGGACAAGTTTCTTACCTTTCTGGAGTCCTCTAGGCTTGGGCCATCCTCCTCACACTCGGACTCCTTATCACCGTCGTAGATTGTATT

Function

NR:

description
mesoderm induction early response protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU565297 True 1103 lncRNA 0.48 5 32658242 32663253

Neighbor

gene id symbol gene type direction distance location
LOC110526888 LOC106585027 coding downstream 137342 32508680 ~ 32520900 (-)
thbs4a LOC106585023 coding downstream 175292 32469312 ~ 32482950 (-)
setbp1 setbp1 coding downstream 279717 32320495 ~ 32378525 (-)
slc14a2 LOC106585019 coding downstream 384095 32260346 ~ 32274147 (-)
LOC110525023 NA coding downstream 577476 32074123 ~ 32080766 (-)
LOC110525784 LOC106585031 coding upstream 16784 32680037 ~ 32682899 (-)
LOC110525785 LOC106585030 coding upstream 27454 32690707 ~ 32730676 (-)
LOC110525787 LOC106585035 coding upstream 87412 32750665 ~ 32759951 (-)
LOC110525788 LOC106585037 coding upstream 220672 32883925 ~ 32924410 (-)
LOC110525792 LOC106585039 coding upstream 283781 32947034 ~ 32962214 (-)
G497518 NA non-coding downstream 45724 32588068 ~ 32612518 (-)
G497428 NA non-coding downstream 247061 32410937 ~ 32411181 (-)
G497427 NA non-coding downstream 247347 32410590 ~ 32410895 (-)
G497116 NA non-coding downstream 268481 32389540 ~ 32389761 (-)
G497663 NA non-coding upstream 162604 32825857 ~ 32826944 (-)
G497698 NA non-coding upstream 264056 32927309 ~ 32927532 (-)
G497699 NA non-coding upstream 264340 32927593 ~ 32930771 (-)
G497704 NA non-coding upstream 274631 32937884 ~ 32938314 (-)
G497707 NA non-coding upstream 278961 32942214 ~ 32942494 (-)
G496851 NA other downstream 765593 31843463 ~ 31892649 (-)
G496777 NA other downstream 986315 31670978 ~ 31671927 (-)
G496772 NA other downstream 996624 31661393 ~ 31661618 (-)
G495560 NA other downstream 2082669 30575118 ~ 30575573 (-)
G495554 NA other downstream 2108792 30545402 ~ 30549450 (-)
G498484 rpl6 other upstream 664254 33327507 ~ 33330504 (-)
LOC110525812 LOC103397138 other upstream 669397 33332650 ~ 33336818 (-)
G498960 NA other upstream 1377106 34040359 ~ 34041174 (-)
G501142 NA other upstream 3102113 35765366 ~ 35767929 (-)

Expression


Co-expression Network