RNA id: XM_036979929.1


Basic Information

Item Value
RNA id XM_036979929.1
length 3535
RNA type mRNA
GC content 0.43
exon number 5
gene id LOC110526888
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 32508680 ~ 32520900 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGCGCTTACTACGCTCTACAACGAACGAACACTGGCGCGCGTTTGGGCCGGACAGTTCAGCTTCGGAACACAGGGACAGCTCCCAGGTGCTGAAATTGTCGAGCATCAAACCGAACCGTCTTCTACAGTAAAACATTTATATAAAAACAGAAAAAGCCACTGACTGACACGAAGCCTTCGACGCAGATGGCTGCCACTCAGGGGACCACTCAAGGGAAGGAGGGCGGGGACCAGAACTTTGACTACATGTTCAAACTGCTGATCATTGGCAACAGCAGCGTGGGTAAAACCTCCTTCTTGTTCCGCTACGCTGACGACGCCTTCACCTCAGCCTTCGTCAGCACCGTGGGCATTGACTTCAAAGTCAAGACCGTCTACAAGAACGACAAGAGGATCAAACTGCAGATCTGGgACACAGCGGGACAGGAGCGGTACCGGACAATCACCACTGCATACTACCGGGGAGCCATGGGCTTCATCCTTATGTATGACATCACCAACGAGGAGTCCTTCCATTGTGTGCAGGACTGgtCGACCCAGATTAAGACCTATTCTTGGGACAACGCCCAGGTGGTGCTGGCTGGGAACAAGTGtgacatggaggaggagagggtggtggCTGCAGACAGCGGGAGACAGCTGGCAGAACAACTCGGTTTTGAGTTCTTTGAAACGAGTGCCAAGGACAACATCAATGTCAAGCAGACCTTTGAACGCCTCGTTGACATCATCTGTGACAGGATGTCCGAGAGCCTGGACACTGATCCTGCCGTTACCACGGGAACACCTAGCGCCAAACTGACAGACAGCGCCCCGCCGCTCCAGCAGTCCGCTTGTAACTGTTAGTGGCTCCTCCCGCTTCCTGTGTTTCGAAGATACCCAGTCCCTTAGATATAggttgcatcctaaatggcacccttttccgtacataatgcactacttttgacgagggcccatagggctctggtcaaaggttgTGTACTTTATAggaaaaagggtgccatttgtgactcaACGGTAGTCTTAAAGTAGGGGTGCACAActaaggtcctggatggctgcaGCAAAGGCCGATTTTCCTCCTTGCCTTTTAATCAGAGATTGACTTGTATAAATACTGTAGGTGCACTCTCTGGCCAATCAGTGACAGTAGTGCATCAGTTAAGTGCCAGGATGGAAGGAAACTCAGCAGGATTGCGGACTGGAGTTGTGCACCCCTGTCTTGTAGTATTCTgatgtgtcatctgaccacttttatCATCGTACATCAGCCAGGGCTGCAGACTGTTTCTGTTCTCTTGACAACTCCTTATGGAATTGTCAAAcatggagttggcaagagcactGATCTGTGACCAGGCACGCAATCTGTCCCTCTATAGCTGTGTTGAGGTACAGATCTTTACACCTTTACCTAGAAACACAGAGGGTCTGAATATGTCTGATGAGTATGTCTGTGTCGGCCTTACAGGATGGCTAATGATATGACACTACAAACATCCATTATCCTCTTTAGCTTACCTTACAACATTAAAAATGATGCTTGTAAAGGCTGTTAGAATTCAACGTGTTGTCCATGCACTGCACAGTAGCCTTCCAACTGGCTTCAAAGACTTGTAATCGATTCAAATTCTATTAGGAGAACCCAGAGCTTTGTCACTGTTTTTATTGTCCATCCTAAAACTTGCAGGGGATAAAGTTATAATCAGTGCATTCATTTATTTAGCCATCTATTTATGCATTTATTATGTTTGTGTTGCATATTGTCTTCTGCCGAAGCCAAAAGCTATTCCGTGTACTGTAGACAAACTGGTAGATGGTAGCTGATTTctgtttgcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttttaggaaAAGTGAATTGAGTGTGGCAGTGTGATAGATTTCAATCATCTACCTTGGGATTAAAAAACAAATGTGGCCTTTTAGTATTTCCAACATGGCCTCTTCTCCTTTATGGTCACCTGCCACATTGATTTCATACTTGATAAATATCCTACATTGTGTCTGtgagtactgtatactgtacacgTGCATTTGTATTAGTAGTCCTGATATACCATCTGATGAGTGTGTCCACATTTCTGCAAAACTGAATAGATCCTCTTTTTCTAGTCTTATTAAGAAATTTGACAAGTGTGCTGTCAAATAACCAATAACCGAAGTTATGTTGTTCTACGCAGACCATTACAGTTATCTTTACCCAAACTACAAACCGACCCTTCCCTCATATCCACTTCCCgaagagaaagaaaataaaaaatgaccACAGCCAAGATATGATATGTTATGACAGGTGGATACTGAAGCCATGATAGAGTCTGTCTGACTGGATAAACATCAATATCCTCCGAAACAGTATTTTTAGGGAGAATGGTGTCCATATTTCATATACCTAAGAAAGTGCACCTTTTCCACATCCTTGAACCACGTTGTTATTGTCTCCATCCTTGGCTGAAGCAAATTGTCCTTTACATATAGGATGTCGTGACAGTCCTGTACCTCCCAGTGAAGATAATCTACCATATAATAGGGGAATAAGGACATAAAACATTTGATAACTAATTGTGCCAACAAAGAAAACTGTCTGTAGTTTGTTTTACATCGTGTCTTTGCATAGAAAATGGAAGGTTCAAAAAAGAAGAGTAGCATGAAGACATTGAATTATCTATATTTATATATCTAAGGGTGTATGTTATCTATGTTATAGATATAGAATTAAGTGCATCTTCATAGCTTTGGCTGTGTGATGCAATGGGCCAACAAGTGCAATATTTTAGGAATTTATTTCTGTACATAGTCCTTCTAGTACCGTATACCTGCAGTTGAGTGACTGGTCTGATGTTGGTGTTGTATTGTATGGCACTGCAAGCAtcacactaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgctttatCTGGGATTTGCAGTGCGGTGAAGTAGTGTAATGGGTGTTTATTACTTATTGTATGCGTGTACCTTTTCTACGGATGTATTCATGCACTATATACTGTTCCTGCTAGCTATCTGTTGGTGAACTCGTACTATACGTGAAAATGCAGTATTGTGGAAGATAGAGAAATTAGGGTATGCCATATGCTGTACTGATATTAAGTCTATGTTATAAAAAAGGGAAATACTACTCCAACAGGATGTTTGTTGTCTGTGTGAGATTATTATTTACCTGTACATGAATAGTAGCCATTACCCTGCTGAGATTGAAACCTCCAACATCTCTACATTCAAATTCCCTGTCATCTACTTCCTCATCTGTGATTATGCATATTCATGACCTCCACTAttcagcccactgggcacagacgtcaattcaacgtctattccacgttgttTTGTACCTTCAAGTGCAAGCAATGTACAAACTATGTGTTTAAGATGATAGGAAATAAACTAATTGTATTCATgtca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU565136 lncRNA downstream 97499 32410937 ~ 32411181 (-) True G497428
TU565135 lncRNA downstream 97785 32410590 ~ 32410895 (-) True G497427
TU564787 lncRNA downstream 118919 32389540 ~ 32389761 (-) True G497116
TU564783 lncRNA downstream 120208 32388216 ~ 32388472 (-) True G497112
TU564703 lncRNA downstream 130307 32366632 ~ 32378373 (-) True setbp1
TU565239 lncRNA upstream 67168 32588068 ~ 32612518 (-) True G497518
TU565297 lncRNA upstream 137342 32658242 ~ 32663253 (-) True G497573
TU565409 lncRNA upstream 304957 32825857 ~ 32826944 (-) False G497663
TU565411 lncRNA upstream 304957 32825857 ~ 32826944 (-) True G497663
TU565450 lncRNA upstream 406409 32927309 ~ 32927532 (-) True G497698
XM_021606203.2 mRNA downstream 25730 32469312 ~ 32482950 (-) True thbs4a
XM_036979922.1 mRNA downstream 130155 32320495 ~ 32378525 (-) False setbp1
XR_005052065.1 mRNA downstream 130155 32320495 ~ 32378525 (-) False setbp1
XM_021606200.2 mRNA downstream 234533 32260346 ~ 32274147 (-) True slc14a2
XM_021606199.2 mRNA downstream 234546 32260346 ~ 32274134 (-) False slc14a2
XM_021606209.2 mRNA upstream 159137 32680037 ~ 32682898 (-) False LOC110525784
XM_021606208.2 mRNA upstream 159137 32680037 ~ 32682899 (-) False LOC110525784
XM_036979932.1 mRNA upstream 169807 32690707 ~ 32713153 (-) False LOC110525785
XM_021606214.2 mRNA upstream 169807 32690707 ~ 32730675 (-) False LOC110525785
XM_021606212.2 mRNA upstream 169807 32690707 ~ 32730676 (-) False LOC110525785
TU564492 other downstream 616031 31843463 ~ 31892649 (-) True G496851
TU564405 other downstream 836753 31670978 ~ 31671927 (-) True G496777
TU564400 other downstream 847062 31661393 ~ 31661618 (-) True G496772
TU563022 other downstream 1933107 30575118 ~ 30575573 (-) True G495560
TU563013 other downstream 1959230 30545402 ~ 30549450 (-) True G495554
TU565305 other upstream 159142 32680042 ~ 32682847 (-) True LOC110525784
TU566350 other upstream 806607 33327507 ~ 33330504 (-) True G498484
TU566347 other upstream 811750 33332650 ~ 33336780 (-) True LOC110525812
TU566881 other upstream 1519459 34040359 ~ 34041174 (-) True G498960
TU569190 other upstream 3244466 35765366 ~ 35767929 (-) True G501142

Expression Profile