RNA id: XM_036979932.1


Basic Information

Item Value
RNA id XM_036979932.1
length 3785
RNA type mRNA
GC content 0.49
exon number 17
gene id LOC110525785
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 32690707 ~ 32730676 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCACAGAAGCGTCAATGCATCATCTAACAAGAAAGGAGTTTGGACAGCTTTCGAGGAGGAAGTCCAACTGTGTGAAGGAAGTGGAGAAACtgcaggagaagagggagagacgaCGGATACAACAACAGGAGCTGAGAGAGAAGAAAGCACAGGAGGTGGACACCACCGTCCCGAACTATGAGATCCTGTATATGATCAGAGACTTCCGTGCCAGTCTGGACTACCGGCCGCTGTCCACCGCAGACCTGATTGAAGAGCACAGaatatgtgtttgtgtgaggaAACGTCCACTCAACAAGAAAGAGCTGACCATACGGGACCTGGATGTGATCACCATCCCCAGTAAGGATGTGGTGATGGTCCATGAGCCCAAGCAGAAGGTGGACCTGACACGCTACCTGGAGAACCAGACCTTCCGCTTCGACTACGCCTTCGATGACAGCACCACCAATGAAATTGTTTACAGGTTTACTGCCAGGCCCCTGGTGGAGACTATCTTTGAGAGGGGCATGGCCACGTGCTTCGCCTATGGACAGACTGGTAGTGGCAAAACACATACTATGGGTGGAGATTTTTCTGGAAAGAACCAGGATTGTTCTAAAGGAATTTACGCATTAGCAGCTCGGGATGTGTTTGTCATGTTGAAGAAACCCTGCTACAGGAAGTTAGAACTTCAGGTGTACGCAACTTTCTTTGAAATCTACAGTGGAAAGGTGTTTGACCTGCTGAACGGTAAGGCTAAGCTCCGGGTGTTGGAGGATGGGAAGCAGCAGGTGCAGGTGGTGGGGCTGCATGAGAGAGACGTCAAATGCACAGAGGACGTCCTCAAACTCATAGAAGTGGGCAACAGCTGCAGaacgtCAGGTCAGACTTCGGCCAACGCCCACTCGTCCCGTAGCCATGCAGTGTTCCAGATCATTCTAAGGAGGAAGGGGAAAATGCACGGCAAGTTCTCCCTGATCGACCTGGCGGGGAATGAGAGGGGTGCCGACACGTCCAGCGCCGACCGCCAGACACGCCTGGAGGGAGCCGAGATCAACAAGAGCCTGCTGGCACTAAAGGAGTGCATCAGGGCGCTGGGGCGGAACAAACCTCACACTCCGTTCAGGGCCAGCAAGCTCACCCAGGTCCTCCGAGATTCCTTCATAGGGGAGAACTCCCGCACATGCATGATAGCAACTATCTCTCCTGGTATGACGTCCTGTGAGAACACCCTCAACACGCTACGCTACGCTAACAGAGTAAAGGAGTTTGGGATCAGTCCCTCAGACATCCCCTTCTCCCAGGGCGGTGGAAGTCGCTCGGAGCTCTCGGAGCTCTCGCCCACCTATGAGTATGATGACTTTGCTACCTCTCCCAGCAGagtgaaggagctgACGGTGGACACTAATCAGGTGATAGAGGGGGTCCGGCCCAACATCCATGTGGTGGACCAGCTGGATGATGACTGGGACCACCTGGGCAGCTCCCCCCAGAGAGATGACCTCAAACTGCTCTGTGAGCAGAACCTGGAGGAGGTGTCCCCCCAGCTCTTAACCTTCCATGAGGCTGTCTCTCAGATGGTGGAGATGGAGGAACAGGTGCTGGAGGACCACAGAGCTGTCTTCCAGGAGTCTATCCGGTGGCTGGAGGATGAGAAGGTTCTGCTGGAGATGACTGAGGAGGTGGACTATGATGTGGATTCTTACGCCACTCAGCTGGAGCAGATCCTGGATCAGAAGATTGACATCCTCACGGAGCTCAGAGATAAAGTCAAGTCGTTCCGCTCGTCACTCCAGGAAGAAGAACAAGCCAGTAAGCAGATCAATCCTAAGAGGCCGCGTGCCCTGCTGTAGACCAGGCCAGGGAGGGGTGTGTGGAGGGGCAGTGGCACATACAGGAACATATACACTAgatgcactatatatacaaaagtatggacaccccttcaaattagtggatttgtggacttactgaagagctcaatgactttcaatgtggcaccgtcataggatgccaccttttccaacaagtcagtttgttaaatttctaccctgctagagctgccccggtcaactgtaagtgctgttcttGTGAAGCATTTAGGAGCAACAACGCTCAGCCgccaagtggtaggccacaagctcacagaacagacccgctgagtgctgaagcgtgtaaaaaatcatctgtcctctgttgcaacactcgctaccgagttccaaacgacctctggaagcaacgtcagtaatagaactgttcgtcgggagcttcatgaaatgggtttccatggccgagcagccgcacgcacacaagcctaagatcaccatgggcaatgccaagcgtcggctggagtggtgtaaagctcgctggcattggactctggagtattggaaacgtgttctctggagtgatgaatcactcttcaccatctggcagtctgactaaCGTATattggtttggcggatgccaggtgaacgccacctgccccaatgcatagtgccaacagtaaagtttggtggaggaggaataatggtttggggctgtttttagtggttcaggctaggccccttagttccagtgaatttTAACGCTACAGCAAACAATGATATTTtatacgattctgtgcttccaactttgtggcaacagtttggggaaggccctttcctgtttcagcatgacaatgcctctgtgcacaaagtgaggtccatacagaaatagtttgtcagattggtgtggaagagcttgactggcctgcacagagccctgacctcaaccccatctaacacctctgggatgaattggaatgctgactgcgagccaggcttaattgcccaacatcagtgcccgacctcactaatgcgcttgtggctgaatggaggcatgtccccgcagcaatgttccaatgtctagtgtaaagccttcccagaagagtggaggctgttatagcagcaaaaggggatcaactccatgttaatgcccatgattttagaatgagatgttcgacgatcaggtgtccacatactttttgcaTTGTAGTGTACTTAACACAGCTGTCTCACCCTGTCACAACCGCCTGTGAAAAGACAAAGGAAAGGACTCATTTGTTTACCAATCAGGGTCACGGATGTCACCAGAAATAACTGGAGGGGAATGCAACCTTGGatccattttttttgttgttgctgatttaaaatgttcagttttttttCCTGttctaattttatttatttacttctcTTTTTTCCCGTATTTCTTTAAATTGAACGGCTGTTGACTTTGCTTCATCATAGACTTCTCCATGTTGGTTGTGCTTTAGGGTTCTACGATACCAGTGTTGTGGATTCTGGTAGGTCTGACTGACATGCAGCCATGTGCCACTCTGTATGTTGGCCTCGATCATGCATGTGGCTGGGTCACTCCTCAGTTAACACTCTACAGCATATAGATGTTACTCTGTAGGACCAGTCTTTCTCTTGCTCCTCTGAGTTTGAGAGGTGTCAAATCAAGCTGTGCTTCTCGTGTTGTCTTTCCTCCCTCTTGTATCCATGTTTTTTCCTCAAAGAACAGTCTATAGTTTGATTCAGTTGTGTTCATGTTTTGTGGCGACCCCAGTTAATTTGTTACCCCTTTTACTTTTATACTGTGAAGTCATTTTTCATtcactttgtaaaaaaaaaaaaatggaacaaAAACCACTAACAAATGTATAGTAAAAACCACTGACCTACTGCTGCATATGTTACTCAGTGTTTGCACCAGATGTAACATTGGCTCAATAAAGAACCACCTGTTTTGATTTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU565297 lncRNA downstream 27454 32658242 ~ 32663253 (-) True G497573
TU565239 lncRNA downstream 78189 32588068 ~ 32612518 (-) True G497518
TU565121 lncRNA downstream 174205 32508687 ~ 32516502 (-) True LOC110526888
TU565136 lncRNA downstream 279526 32410937 ~ 32411181 (-) True G497428
TU565135 lncRNA downstream 279812 32410590 ~ 32410895 (-) True G497427
TU565409 lncRNA upstream 112704 32825857 ~ 32826944 (-) False G497663
TU565411 lncRNA upstream 112704 32825857 ~ 32826944 (-) True G497663
TU565450 lncRNA upstream 214156 32927309 ~ 32927532 (-) True G497698
TU565451 lncRNA upstream 214440 32927593 ~ 32930771 (-) True G497699
TU565463 lncRNA upstream 224731 32937884 ~ 32938314 (-) True G497704
XM_021606208.2 mRNA downstream 7808 32680037 ~ 32682899 (-) False LOC110525784
XM_021606209.2 mRNA downstream 7809 32680037 ~ 32682898 (-) False LOC110525784
XM_036979929.1 mRNA downstream 169807 32508680 ~ 32520900 (-) False LOC110526888
XM_021606203.2 mRNA downstream 207757 32469312 ~ 32482950 (-) True thbs4a
XM_036979922.1 mRNA downstream 312182 32320495 ~ 32378525 (-) False setbp1
XM_021606215.2 mRNA upstream 37512 32750665 ~ 32759951 (-) False LOC110525787
XR_005052067.1 mRNA upstream 37512 32750665 ~ 32759951 (-) True LOC110525787
XM_036979936.1 mRNA upstream 170772 32883925 ~ 32924407 (-) False LOC110525788
XM_036979934.1 mRNA upstream 170775 32883928 ~ 32924408 (-) False LOC110525788
XM_036979933.1 mRNA upstream 170775 32883928 ~ 32924409 (-) False LOC110525788
TU565305 other downstream 7860 32680042 ~ 32682847 (-) True LOC110525784
TU564492 other downstream 798058 31843463 ~ 31892649 (-) True G496851
TU564405 other downstream 1018780 31670978 ~ 31671927 (-) True G496777
TU564400 other downstream 1029089 31661393 ~ 31661618 (-) True G496772
TU563022 other downstream 2115134 30575118 ~ 30575573 (-) True G495560
TU566350 other upstream 614354 33327507 ~ 33330504 (-) True G498484
TU566347 other upstream 619497 33332650 ~ 33336780 (-) True LOC110525812
TU566881 other upstream 1327206 34040359 ~ 34041174 (-) True G498960
TU569190 other upstream 3052213 35765366 ~ 35767929 (-) True G501142
TU570258 other upstream 3794903 36508056 ~ 36517268 (-) True hk2

Expression Profile