RNA id: XM_036979969.1


Basic Information

Item Value
RNA id XM_036979969.1
length 2056
RNA type mRNA
GC content 0.54
exon number 16
gene id LOC110525830
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 33953576 ~ 33970203 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCCAGGACTAGGTTGAAAGGACGTTGATAAATCACGTGATTGACCGAGGAAGCTTGGTTGTGTCAGCTGACGGCTTAGCTTGCTGTCTTTTTCCCTCAAGACGTCGGAATGCCAGCAATGTGTACCCACGTCCAGCCCATCGAGTGGACCACTGACTGTAAGAACCAGAATTATGATGGCGTAGTCTTGGTGACCCAGAGTTATGACACGCTGCCCAAGGAGCTGGAATGTCTGAAAGCACCTCTGCAGGACTACAGCTCTGTGGACTGTGGTCTGGGAGATaaggtggtggtgttgatggttcCGGGGTTGCCTGGTAAACGCTTGGTGTTTGCGTCCACCGGGCCCGTTAACCGGGACTACGATGACGTCCGACGCTTCAGCGACGCAGCCGTTAATGGCATCAAGAGGGCCATGAAAGCAGGCATGCAGCGCCCCCTGCTGGTCTGTCCTCGTCACAGCAGCTATGACAGGAGCACCATGGTTGCTGCCCTAGGGGCCCTGCACGCCCTCTACATGcCTCTGGAGGTGAGGGAGGTGTCTGTGAAGCCCAGCCAGTATAAAGTGTGTGTTCTAGGGTTGTGGGTGGACCAGGAGGCCCAGGGGAAGGAGTTGGTGGACCTGGTCTCCGCTCTGGAGAGTGGACGgCTTGCTTGCCGTGACATAGGAGGGTCTGATCCTGAGAGGATGGCTGCTCCTCGTGTAGCTGAGTACGTCCAGGCCCTCTTTAAGGAGAGCCCAgtgcagGTGGATGTGGTGAGTGATCTGAAGGTGCTGGAGAAGGAGTATCCCTGCCTCGCTGCTGTGAACCGCTGTGCCaatgCTGTGCCTCGTCACCAGGCCAGAGTAATCAAGCTGCAGTACTGTGGAGAAGGACCCATTCAACACACACTGATGCTGGTCGGCAAgggcatcACCTATGACACCGGTGGAGCTGACATCAAGGCTGGTGGCATCATGGCTGGCATGCACAGAGATAAGTGTGGTGCTGCTGCCGTGGCTGGGTTCTTCCAGGTCCTGGCCAAACTCAAGCCCAAGCATCTGAAGGTGGTGGGTGGCATGGCGATGGTGAGGAACAGCGTGGGCTCAGaTTGCTACGTAGCTGATGAGTTGGTGGTGTCCCGTGCGGGTCGCAGGGTTCGCGTAGGGAACACCGATGCTGAGGGACGCATGGTGATGGTCGACCTGCTTTGTGAGATGAAGGAGAAGGCGGTGCATGAGGTAtctcctcagctgtttaccattGCCACTCTGACAGGACATGCCATCAGAGCCATGGGACCCAACTACTCTatcatcatggacaaCGGAGCTGCCCATCGCTCTGGCAATGCCCGTCAGTGGCAGAAAGCAGGGGAGGTTCTGGGTGATCTGTTTGAGGTGTCCAGTATCAGGCGTGAGGACTATGACTTCCATAAGGGGAAGTCCGAGTATGAGGAGATTCTGCAAAGCAACAACCTACCATCCTCTGCTACCCCCCGCGGACATCAGACCCCCGCTGCCTTCCTCATCATGGCCTCTGGGCTggacaagCACGGCGTGGACTCTGGCACTCCTCTGCCTTACTCTCACATCGACATCGCTGGCTCTAGCGGCCCCTTCCCTGGTGTTCCCACCGGCGCTCCAATCCTCGCCATGGCTACCAACTACATCCTACCCAGTGCCTATCAACCCAACGACGCCCTGCCCAGAGCCTAGCAATTTGATGATAGAAATAGAATGTGTCGAATGGACCCTATTTTCCATCTCATGAGAAATGTCACATAGAGCAGTCCTGATAGTGCCAGTTCAATTGATGTTTCACAAAGTATTCATGAACACAGATATCCATCAATGCGATCAAGATCTGTTGTCCTATAGATTTTATTTCTAAGCTACTGCACTATCATTCAACCTCAAATGTCAATTTTTTCTACCCCTATTTCTAACATGGGTCACTGTATTGAATACACTCTCAATTACCAAACATGCTTTGTTGTTCATGCAGCCATTTTGTGAGTTGCAGGTCATGTGGTTGTGTGCCAGACAATATCAAGTACAATATCAAGACTAATa

Function

GO: NA

KEGG:

id description
K01255 CARP, pepA; leucyl aminopeptidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU566751 lncRNA downstream 972 33952069 ~ 33952604 (-) True G498833
TU566659 lncRNA downstream 154769 33793771 ~ 33798807 (-) True G498746
TU566702 lncRNA downstream 199691 33753556 ~ 33753885 (-) True G498787
TU566504 lncRNA downstream 202588 33750606 ~ 33750988 (-) True G498619
TU566671 lncRNA downstream 208868 33699173 ~ 33744708 (-) True G498756
TU566748 lncRNA upstream 640 33970843 ~ 33973777 (-) True G498830
TU566799 lncRNA upstream 10721 33980924 ~ 33981134 (-) True G498880
TU566838 lncRNA upstream 47733 34017936 ~ 34018177 (-) True G498918
TU566843 lncRNA upstream 49891 34020094 ~ 34020379 (-) True G498923
TU566858 lncRNA upstream 57572 34027775 ~ 34028521 (-) True G498938
XM_021606282.2 mRNA downstream 2743 33947962 ~ 33950833 (-) True LOC110525832
XR_005052458.1 mRNA downstream 3784 33949722 ~ 33949792 (-) True LOC118965128
XM_021606274.2 mRNA downstream 26531 33882644 ~ 33927045 (-) False kcnip3a
XM_036979966.1 mRNA downstream 26531 33882644 ~ 33927045 (-) True kcnip3a
XM_036979968.1 mRNA downstream 56914 33882644 ~ 33896662 (-) False kcnip3a
XM_021606283.2 mRNA upstream 277431 34247634 ~ 34254263 (-) True LOC110525833
XM_021606286.2 mRNA upstream 333042 34303245 ~ 34327772 (-) False LOC110525835
XM_021606288.2 mRNA upstream 333042 34303245 ~ 34327773 (-) False LOC110525835
XM_021606285.2 mRNA upstream 333042 34303245 ~ 34327777 (-) False LOC110525835
XM_021606287.2 mRNA upstream 333042 34303245 ~ 34327778 (-) True LOC110525835
TU566347 other downstream 616796 33332650 ~ 33336780 (-) True LOC110525812
TU566350 other downstream 623072 33327507 ~ 33330504 (-) True G498484
TU565305 other downstream 1270729 32680042 ~ 32682847 (-) True LOC110525784
TU564492 other downstream 2060927 31843463 ~ 31892649 (-) True G496851
TU564405 other downstream 2281649 31670978 ~ 31671927 (-) True G496777
TU566881 other upstream 70156 34040359 ~ 34041174 (-) True G498960
TU569190 other upstream 1795163 35765366 ~ 35767929 (-) True G501142
TU570258 other upstream 2537853 36508056 ~ 36517268 (-) True hk2
TU570775 other upstream 3080500 37050703 ~ 37064989 (-) True vamp8
TU571292 other upstream 3269641 37239844 ~ 37240937 (-) True G503064

Expression Profile