RNA id: XM_021606286.2


Basic Information

Item Value
RNA id XM_021606286.2
length 5638
RNA type mRNA
GC content 0.53
exon number 28
gene id LOC110525835
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 34303245 ~ 34327778 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATCCCACtgaagaaaaataagaaaaaggCTGTTTTTGTTTCCAGTGAGCTGCTGCGAAAATGGCGGTGTCTCGTCGCTCATCGCAGCAACAACAGCTGGGTAACCTGCAATCTCCGCCACGAAACAGTTCTCTTTCTGGAAGTCCTCCGGACTCTCTGCCAATTGATATTGTGGCAGCGACGTCAGTGCCCCCGGATGGTGAGCGTGGATGCAGCGCAGGCATGGAGAATCCTTCGGGCTCTCCGGATCTTCCAGCCCCGGCCCTCAGCACTGGGAGCAGCACAAGCCCGACCACAACAACCTCCGGCGGGGAGAGTAGTATTGTCTCGAGCCCCGGTTCAGGAGGCACGAGCCCCGGCGACGGCAGTAGCGGGATCGGTGGAGCTTTCAGGGATCTATTTGAGGCCTGTCGGAATGGAGATGTATCCCGTGTGAAGAGACTTGTAGACTCGGTGAATGTTAATGCGAAGGACATGGCCGGGCGAAAATCTACCCCTCTACATTTCGCTGCAGGTTTTGGACGAAAGGATGTGGTTGAGCACCTTTTACAGACTGGAGCTAATGTGCATGCTAGAGACGACGGTGGTCTCATTCCCCTTCACAACGCCTGCTCCTTTGGCCATGCCGAGGTGGTCAGTCTCCTGCTGTGCCAAGGTGCAGACCCCAATGCACGGGACAACTGGAACTACACACCTCTGCACGAGGCAGCCATCAAAGGCAAGATTGATGTGTGCATCGTGCTCCTCCAGCATGGCGCCGATCCCAACATCCGTAATACGGACGGCAAGTCTGCCCTGGATCTGGCAGACCCCTCTgccaaggctgtgctcactgGTGAGTACAAGAAGGATGAACTCCTGGAAGCAGCAAGGAGTGGCAACGAGGAGAAACTGATGGCACTACTGACCCCGTTAAATGTCAACTGCCATGCCAGTGATGGCCGCAAGTCAACATCCCAAAAAATGCTGTCCACCCCACTGCACCTGGCGGCTGGTTACAACCGCGTACGCATCGTCCAGCTACTGCTGCAGCACGGGGCAGACGTCCATGCCAAGGACAAAGGTGGCCTGGTCCCTCTTCACAACGCCTGCTCCTATGGACACTTTGAGGTCACAGAGCTTCTTCTCAAGCATGGAGCGTGTGTGAATGCCATGGACCTGTGGCAGTTCACCCCTCTCCACGAGGCCGCATCTAAGAACCGTGTGGAGGTGTGTTCTCTGCTGCTGAGCCACGGGGCCGACCCCAACCTGCTCAATTGCCACTGCAAGAGTGCCGTGGACTTGGCCCCCACCCCTGAACTCAAAGAGCGGCTCACCTATGAGTTTAAAGGTCATTCGCTGCTCCAGGCAGCTCGGGAGGCAGACATGGCCAAGGTGAAGAAGACTCTGGCTCTGGAGATCATTAGCTTCAAACACCCACAGACCAACGAGACAGCCCTGCACTGTGCCGTTGCTTCCCCTCACCCCAAACGGAAGCAGGTGACCGAGCTGCTACTGCGTAAAGGTGCCAACGTCAACGAGAAGAACAAAGACTTCATGACGACTCTGCATGTAGCGGCTGAGAGAGCACACAACGACATCCTGGACGTGCTGCAGAAACATGGAGCCAAGgtAAATGCGGTGGACACCCTGGGGCAGACAGCCCTCCACAGGGCAGCCCTGGCGGGCCACATCCAGACATGCAAGCTACTGCTGAGCTACGGGGCCGACCCGGCCATCGTCTCCCTGCAGGGCTTTACTGCCTCACAGATGGGCAACGAGGCCGTGCAGCAGATCCTCAATGAAAATATTCCAACTCGTAACTCTGATGTCGACTACCGGTTTCTGGAAGCCGCCAAGGCTGGAGATTTGGACACTGTGCAGCAACTCTGCACTCCTCAGAACGTGAACTGTCGGGACCTGGAGGGTCGTCACTCTACCCCTCTGCACTTTGCTGCAGGCTACAACCGTGTGGCCGTGGTGGAGTACCTGCTACATCACGGAGCTGACGTACATGCTAAAGACAAAGGTGGTCTGGTGCCCCTCCACAACGCCTGCTCCTACGGTCACTATGAGGTGGCTGAGCTGCTGGTGAGACATGGGGCATCGGTGAACGTAGCTGACCTCTGGAAGTTCACCCCGCTCCACGAGGCTGCCGCCAAGGGCAAATACGAGATCTGCAAACTGCTGCTCAAGCATGGAGCGGACCCCACCAAGAAGAACCGTGATGGTAACATGCCTCTGGACATGGTGAAGGATGGCGACACGGACATCCAGGACCTGCTGAGAGGAGACGCTGCGCTGCTGGACGCTGCTAAGAAGGGCTGTCTGGCCCGCGTCCAGAAACTCTGCAGCCCAGAGAACATCAACTGTAGAGACACACAGGGACGTAACTCCACCCCCCTGCACCTCGCAGCTGGCTACAACAACCTGGAGGTGGCGGAGTATCTCCTGGAGCATGGGGCTGACGTCAATGCGCAGGACAAAGGAGGCCTCATCCCCCTGCACAACGCTGCCTCCTATGGGCACGTGGACATTGCTGCCCTTCTGATAAAGTTCAACACATGTGTGAACGCTACAGACAAATGGGCCTTCACCCCACTCCACGAAGCAGCTCAGAAGGGCCGTACCCAGCTGTGTGCTCTGCTGCTGGCCCACGGAGCAGACCCCACCATGAAGAACCAGGAGGGACAGACCGCACTGGACCTGGCTACGGCTGATGACATCCGTGCCCTGCTGATGGATGCCATGCCCCCGGATGCCCTGCCCATCTGCTTCAAGCCCCAGGCCACGGTGGTCAGTGCAGGCTCGGTCATCTCCCCAGCCTCCACGCCCTCTTGCCTGTCTGCAGCCAGCAGCATCGACAACCTGGCTGGGCCGCTCAACGAGCTCGGGGCCGCAGGGACCTCCGGAGTGGCCGACGGGGCCGCAGGCTCCGACAGGAAGGAGGGGGAATTGGCGATGTTGGACATGAACATCGGTCAGTTCCTGAAGAGCTTGGGTCTGGAGCATATAAGGGAAATCTTTGAGAGAGAACAGATCTCTCTGGATGTGCTGGCTGACATGGGTCACGAGGAACTGAAGGAGATTGGGATCAACGCTTACGGCCACCGACACAAACTCATCAAGGGAGTGGAGAGGCTGCTGGGGGGACAACAAGGTGCCAACCCGTACCTGACATTCCACTGTGCCAACCAGGGCACGGTCCTCATCGATCTAGCCCCTGACGACAAAGAGGGCCAatcagtggaggaggagATGCAAAGTAGCATCAGAGAACACAGGGATGGAGGGAACGCAGGAGGGGTGTTCAGCAGATACAACATCATCAAGATCCAGAAGGTGGTCAACAAGAAGCTGCGGGAGCGATACACACACCGCCAGAAGGAGATATCGGACGagaaccacaaccaccacaatgAGCGCATGCTCTTCCATGGTTCTCCGTTCATAAATGCCATCATCCACAAAGGTTTTGACGAGCGGCATGCGTACATCGGAGGGATGTTTGGAGCAGGGATCTACTTTGCTGAGAACTCCTCTAAGAGTAACCAGTATGTTTATGGCATCGGGGGCGGCACCGGATGCCCCACTCACAAAGACCGCTCCTGTTACCTGTGCCACAGGCAGATGTTATTCTGCCGCGTAACCCTGGGGAAGTCCTTCCTCCAGTTCAGTGCCATGAAGATGGCCCACGCCCCCCCTGGACATCACTCTGTGATTGGCCGGCCCAGCGTCAACGGCCTGGCCTACGCAGAGTATGTCATCTACAGAGGAGAGCAGGCCTACCCAGAGTATCTCATCACCTATCAGATCCTTAAGCCGGAGAGTACGGCCGCGTCTGCTGCAGGAGCGGAGCAGAAGTCTTAGTCCTGCACCACCAGACCAATCTCACACAGTTACTGAACACAGTCCTCCTGACCCACAACATACAAGACTGAGGCTTTTTAGTGTTTTGTCTCTGTGCTTTTTTGTTTTATTGTAATGTCTAAACCTTTTTTACATTTTCTTCACAGCCTGAGTTCCAGTTCAATTCTTCTTGTCcagtagagttaacagtagacTGCTCAGGCGACATATgaagtatactgtaatatattatcTGCTTGTGGTGATAGTTTTTCGGTTTCCTTTGCATTGGCTGCATGCATAGACAGACGCATGTATAGCCCAATAGCGTGTGTGGGTTCCCCACTACCTACCCCTGGAGAGGGTTGTAGAGATTCACCCTCTCGTCTGCCCTACAGTGTCAGAATATTAACAATTCGCTACCATTCTCACCTTATCATGCCTTGTGACTTGGAGAATCCTCTCTCAACCCTGTTGTTTTCAACCAGAGTATGTAACCCCTGTAATACTGGCCTGCCCCAGCCATCcttacatgcatacatacatactatacatgaccaaaggtatgtggacacctgctcatcgaacatctcattccaaaatcatgggcattaatatggagttggtccccacctttgctgctttaacagcctccactcctctgggaaggctttccactagatgttggaacattgctgcggggacttgcttctatgcagccacaaaagcattagtgaggttgggcaattaggcctggcttgcagtcggggttccaattcatcccaacgttgttcgatggggttgaggtcagggctctgtgcaagctaGTCAAGTTCtaccacaccaatctcgacaaaccatttctctatggaccttgctttgtggatgggggtattgtcatgctgaaacaagaaaggtccttccccaaactgttgccacaaagcaaaaagcacagaatcatctagaatgtcattgtatgctgtagcattaagatttgccttcactggaaccaaggggcctagcccgaaccatgaaaaacagccccagaccatttttccCCTTCCACCAAACTTCATAGTTGGCactgcattcgggcaggtagtgttctcctggcaaaTGGTGAAGCCTTGATTTATCaatccagagaacgcatttctactgctccagagtccaatggcggcaagctttacaccactccagccgacgcttggcaatGCGCATGAtcattttaggcttgtgtgcgtgcgactgctcggccatggaaatccatgtcatgaagctcccgatgaacagttcttgtgctgatgttgcttccagaggctttTTGGAACTCGGTATTGTTTTttcaatggagattgcatggtggtgtgctcgattttgtacacctgtcagcaacgggtatggctgaaatagccaaatccactaatttgaaggggtgtccacataattcTACCAGTACACACGTTTAATGGGAAGAGAACAATTATCTACTCAcacattattattgttattattattgttcatTGCACAAGAAAAGATGTGAACTCCACATCCCGGATTGCCATGGTCTTATTCAAATCCATGTGTAAGGATTTGCACTTTTAAGTAGAAAACTATTTAAGTTATTTGAAATTAATTGCAaatgttatggggggggggggggggaaatgtatGTACAGGTTGTGTAAATGGATGTGTATAACTTGATGTTTTAACTATGTAATTTGAGTTCTATTGTAAATTAAGTCTAAATTCTGTTCTGGTCTTGATTCTCTCTACTTTTTGAATAAACATTATCCACGTAAGAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU567050 lncRNA downstream 141039 34161934 ~ 34162206 (-) True G499127
TU567018 lncRNA downstream 171682 34131206 ~ 34131563 (-) True G499096
TU567006 lncRNA downstream 181327 34121707 ~ 34121918 (-) True G499084
TU567003 lncRNA downstream 181806 34121202 ~ 34121439 (-) True G499081
TU566996 lncRNA downstream 185990 34117054 ~ 34117255 (-) True G499074
TU567380 lncRNA upstream 46799 34374571 ~ 34374790 (-) True G499440
TU567440 lncRNA upstream 139629 34467401 ~ 34467770 (-) True G499497
TU567441 lncRNA upstream 140217 34467989 ~ 34468195 (-) True G499498
TU567450 lncRNA upstream 149734 34477506 ~ 34478051 (-) True G499507
TU567451 lncRNA upstream 150496 34478268 ~ 34478548 (-) True G499508
XM_021606283.2 mRNA downstream 48982 34247634 ~ 34254263 (-) True LOC110525833
XM_036979969.1 mRNA downstream 333042 33953576 ~ 33970203 (-) True LOC110525830
XM_021606282.2 mRNA downstream 352412 33947962 ~ 33950833 (-) True LOC110525832
XR_005052458.1 mRNA downstream 353453 33949722 ~ 33949792 (-) True LOC118965128
XM_021606274.2 mRNA downstream 376200 33882644 ~ 33927045 (-) False kcnip3a
NM_001124242.2 mRNA upstream 3410 34331182 ~ 34366489 (-) True piwil2
XR_005052410.1 mRNA upstream 168985 34496757 ~ 34497935 (-) False LOC110525025
XR_005052411.1 mRNA upstream 168985 34496757 ~ 34497935 (-) False LOC110525025
XR_002473697.2 mRNA upstream 168985 34496757 ~ 34497945 (-) False LOC110525025
XR_005052412.1 mRNA upstream 168985 34496757 ~ 34497945 (-) True LOC110525025
TU566881 other downstream 262071 34040359 ~ 34041174 (-) True G498960
TU566347 other downstream 966465 33332650 ~ 33336780 (-) True LOC110525812
TU566350 other downstream 972741 33327507 ~ 33330504 (-) True G498484
TU565305 other downstream 1620398 32680042 ~ 32682847 (-) True LOC110525784
TU564492 other downstream 2410596 31843463 ~ 31892649 (-) True G496851
TU569190 other upstream 1437594 35765366 ~ 35767929 (-) True G501142
TU570258 other upstream 2180284 36508056 ~ 36517268 (-) True hk2
TU570775 other upstream 2722931 37050703 ~ 37064989 (-) True vamp8
TU571292 other upstream 2912072 37239844 ~ 37240937 (-) True G503064
TU571387 other upstream 3003712 37331484 ~ 37336552 (-) False G503159

Expression Profile