RNA id: XM_021606283.2


Basic Information

Item Value
RNA id XM_021606283.2
length 6630
RNA type mRNA
GC content 0.45
exon number 1
gene id LOC110525833
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 34247634 ~ 34254263 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acaacattgattcaaccagtgtgcccagtgggagagggagatggcATGGTCTCATGACGCCCGTATTGGCATCACTCCGGTTggaaaagagagatgagaggagagacgctTCCATTATTAGACTGGTGCTCACGGTCACGCTCACTCCTGGAGATGCGCGCGTTGCTGCGAGACCAACCGATAAGTTCGAGGAGAGAATCGGCGAGGCGCTGAACTCAGGAGCACCGCTGCGTGAAGAGATAGCCTAGCCTTCTGTAGGTTACACTCGGACATGGAGAGACCGAACTAGGGTCTACGAGCCAGTCAAAGCAAGACTGCGCATTATCTGCACTTGGATATACCCAACAACGCACCCACACATTCATCCCAAACCGAGATGAGGAACAGCTAAACACCACGAAACTGAAACAACAACTCAACAACTCAATATGTAATTTGGACTGCGCAACTGCGCAACTTGGAGTTATGTTGGACACgggtttgttttcatgaattccAAACTTGTATCGTTACACTGAGGACGTGCTCACGTTACAACATAAACGAATAAGTGCCATTCAGAGACAATTTATTATTTTAGGAATCCATTTTGCTTGAATAATGTCCAGGATTATGCAGATGAAGTGAGTGACATACTTTGGTAACGCGCGCCAGTTAGTCTGTCAAGGCTTGACCATTTTATGAGCTAAATCTGTTCAAACCAATGTTTTCTTGTCCTTATAGGAAAACAACTGCATACCATTTGATATTTATTAGAATGATGATAGGCTGTTTGTAAGTCATTTGTCAACTTTAACATTGCTCAGATAGCCATCccgctgggcacacactggttgaatcaacgttgtttgcgcgtaatttcaatgaaattatgatgaaccaatgtggaatagacgttgaattgatatCTGTGCCCAGTAGGCTGCTGTGTGCATCTCCATTTGAGAGACAGCGGGGACTTGAGCACACTAACATCTGAAGTAGGCTCCCCTGCCCAGTTTGTAACTGGTTCCCATTCTCTTGTGTTGCCTTGTATTATAGGCTGAAATGATATTTTAAGGATATTTCTGTGACCACCTGGACATAACTTTCCGCTTCTTTAAAATATTCAAACAATTAAGCAGCTGTGAGATTACGATCAATTCTGTTTCATGTACTGGACAACTTTTAATGGTTTGAACGGATTTATTTTCAGACAGCAAATATAATTGCTCTCTCCTTTATTCTGGCGCGCTCCACGGGCATAGTTTATCGTTTGGCTGCTTAGAACGAACTTGGAGGATGAaactgggaggaggagagggaatgaaCAGCGATAACACAACATTAATACTtttagttatagcctaatgtttttTTCCTAAACTTTTAGGATATAATTTTATGTCAGCCATTCTCAATATAAAACAACGTTACCAACAGCATCTTTATTACAATAACATTTTATTCTCACATTAATCAAGTCCATCCATCGTGTTACTCATGGCTTCACCCTTGAATAGTGCATGTTCAGTGGGGCTGGGCGACACTAATGGTTCGACCAGCGGTTTGTCTCTTCCCTGCAATCAGAGCGTCTCTTCCCTGCAACTGGCCCCCTACTCCCCCGAATCCACGGCGCTCTTCGCTACAGCCATCACCCTCATGGTGGTCTTCACAATCGTGGGAAACATCCTCGTCATCATTGCCGTCCTGACCAGCCATGCACTCCGAGGACCACAGAACCTGTTTTTAGTGTCTCTAGCGGCTGCAGACATTTTGGTGGCGACCCTCATCATCCCATTCTCCCTAGCCAATGAACTGCTGGGATACTGGTACTTCAAGTCTCTGTGGTGTGAGATCTACCTGGCGCTGGACGTTCTGTTCTGCACTTCCTCTATAGTTCACCTGTGCGCCATCTCATTGGACCGTTACCTGTCCATCAGCCGGGTTACCTACTCTCGCCAGCGCACACCCATGCGTATTAAAGCCTCCATCGTGGTGGTGTGGCTCATCTCGGCCAtaatctccttccctcctcttctgtCGCTAAATAAGAGCGAGCCCGGCGGGGAGGGGAGTGAGAGGGGTCCTCAGTGCCAACTGAACGACGAGCGCTGGTACATCCTCTACTCCACCGTCGGCTCCTTCTTCGCCCCATGTCTCATCATGATCCTGGTCTACATGAGGATTTACCAGATCGCCAAGCAGCGCACACAGAACCCGCCAGGCGAGCCCAGGAAAGACGGGGTGGGCTGTGCCACCCCAAGTCAAACCCCTCGGGGGATCCAAGCCAACgggaaggaggacagaggggaaaCCCCAGCTATGCCCCACAAAACCACCAGCGTCAGACCCCCCACACTGGCTGTTACTCCATCACCGTCCCCCGACCAGGCCAATGAGACCCCCTCCCCTCACATCCCCACCACCCAAAACCTCCTCCATGCTCCGGTTCTATCCCTAGCTCCAACCCcaaccaccacctcccctcctacctccccCCTGGATCCTTCACCCTCCTTGGTCTCACCGTCTCACTCCCCCACCATCCCCCCACCAtccccggccaaacccaaacATGGGGAGAAGAAGGTGAAGGGGAAGAAGGGAAAGAAGTATAACAATAATATGGACTGCTCAAATAGCTCTGACAGTGACATGGAGAACGAGGAAGGGGGGAGGACTGGAGTCAACAATCCTAGCATGGCTGGTTCAGCCGGCATCCATTCTCCAGCCACCATCCAGAAGTACAGGGACATAATCGCCACCTCTAAGGGGGCTCGGCTGGTGGCAGGGAGGAGGTCTAAGCCGGAGAGCACTCCGGGAGCAGCACGTCGTAAAGCCATGGTGAACAGAGAGAAGCGCTTCACGTTCGTCCTGGCCGTGGTGATCGGAGTGTTTGTTGTCTGTTGgttccctttcttcttctcctactcgctgcaggccatctgtcctgAGACCTGCTCCCTCCCTGATCCCCTCTTCAAGTTCTTCTTCTGGATTGGCTACTGCAACTCCTGTCTGAACCCTGTCATATACACCATCTTTAATCAGGACTTCAGAAAGGCCTTCAAGAAAATCCTCTGTAAGAACACCAAGGGCACCTTCTTCTAGACTGAATGCTCTGTAAGGACAACAATGGCAACCTTCCTTTAGTAAAGAGGCCTTAAACAGATGACCTGTAAGGTCAGTCCTTTCTTTTCAGTCCTCTCTAAACTCTTTGAGGTGTAAAAAACAGCACAAATATTCTGTAAACATTCTGACTGATTTTAGATTCTAATTGATGATGTTACGAAGGGCTGCCAATTCTATAACGCTGAATCAGAACAGCTGTAGGATAGCTCACCTTGCAACAGAAAGAAACTTTTAGGGCTCGTTGTTTTAGTCCCTTGGTACGTAGCTGCAGACATCTAGCCGCGACCTGGAGAACTGTGACTGTCCATTGCAAGGGCATTGTCTGGGGAGAGCATGTGCAAAATATGTTACGTGAATTCTACTCTGGGGGGCTTTAGAATGATACTGTGTAAGAATCCAAGGGCATGATCCTGATCCTTTAGTAAAAGGTAGGAGGTATGTTCTGATCTATGAGCATTACACAGTATGTGTAGAGAGTgcggaaaggaagagagaaggaggaaaaggAAAAGAAAATGCCATTTTGGATTTTTAGTCACTCGTGACATAAAGGACATGTTGCTTGGAAAATGACAGTGCAACGCTGCTCTCGTCaaaatatgactgactgactcacatTAAGGTTGTCTGGGAAATCTGTTTGATTAAAAATGGAGAAACCTTTGGGTATAGCAGTACACCACTGCTCACTGAGAACTCCTGATCAAAACAACAGTCTTGAGCGCTGCCATTCAAGGACTTTAAAGCGATGAAGCAAACAAATATCCTTTTATCAGCCGACTGATAAACAAAATAGAACAATGCGAGGAGATGATAGGCCAGACCTGTTGGCCTGTTTAAGCACCACCAGAGGCACTTCTCTTTATCAAAGGGCAGAACCACGAGGAACGCACAAGACCCTGGTCGCCTTTCCACTTACGCCTGCATAGTTACTTTTATCCTGCCTCAGGAATAGCATGTGTTCCTGTAGAGATGTTAtccatatgagagagagagagagagagagagagagagagagagagagagagacaacaacaggACTCTAACTGTTCTTGAGACAACTAACTCCCTCTCAAACTCTGATGCCCACCACTGCTTTCATGTGGGGCTTAGGCTATATTTTGAAAGACTCTGTGTTTTaaggtgcatctcaatagtctattGTGGCTTCCTCTGCTTGTGTCttttccttcatctgcactgaaaAACAAAGGATATAGGTGGATGCAATATGAAGGATCAGGCATTTGTTTCCACATCTCTGTGTCAGTGCAGGTGAACTAAAAGATGAGGAGAGTAAACAGCATAACACTATTGTTATACACCCCTATAAGAGAATTTGAgttccaaatggcaacctattcgatatatagtgcactacttttgcctaGAGCCCATAGgactctagtctaaagtagtgcactatgtagggaatagggtggattGTATCTAAAGTACTAAAGTAcggaaatgtatgcactcactactgtaagaggCACTTGATAAgatcgtctgctaaatgactaaaatgtaaattttATCTGTATATTGGGTCTATATAGCACAATTTCAAGCATATCACATTTATAAGAGGATAAATACTTTCCCAAATCCCTTGACAAGGAACGCAAATTTGGGACATTTAAGGATTTTTTGGAATGCAGTATAGTCgtacatattttttttcttctatcaAAGACACTGGACAGTGACTATCTGGCTTTGTTTGAGTGGATTCATCTGACTTCTGCCTGAAAGGACATTGCTATTAACGAACACACTGCTCCCcattgaacagaacagaacagtagctGTCTATGAGAGGAGGAACTCAGCCACGTTAGCTCTACTGCTGGCCTGACACAAACACTTCAAACGGTCTTAAAAACACTCCAGTTGATATTGACTATAATACTGAAAGCACAGGTCATGTTCATCCTCAGCTACTTCTGGAAGGACATTCATCCCATAAGATAATATAGTACTTTATTAAGCTCCCAAATGGCAAATAtgggatggatgaatgaatgaatggttgATTGCTTGATAGATCAATGAATTGATTGATTTGGGAATGTACCTGCACTTGCTGACTGGAATTCTACCTAGCACATTCCTTTATTTCTGAGAGGTACTGCTACTCTTTACAGTTGTTCTTTATGTATTTCTCAGAGACTGTCAGGTCATGATGCTTTTTGTGTTTCTCCCTCACAGAGGCTATGTCTGTAACTGTGTATGCTATATAGGTGTTATGACACTATGGTACAAGGAATGTCGGCAACAACACTTCTAATCTCCCATTGTCAATTTTTGCCGACCCTTGTCTATGTGAGAGAGACTGCATGAGTGTGTATTTTCTAGTGATGCACTTTTAGTGGTACCAGCTGCAAGGGTCTGGTAAACTTATGTAAAATGTCTGGGGTACTCATGGACTGTGCCAAAGCCTCCTCTGGCTGATATTGTATACTGTAGCCCTCCACATAATGGTAAGCACAGAAAACTGATGTAGATATAGAGACTCAGGCCAAAGATCTCTCCCCCTGAGGGACACTAGTCACTAGATGGCCATGCTTTGAAAGTACATTATCTATTTGTTCTTCCTTTAGGGTTATAGTTAGTGTTACGGATATGGGTAAGGTCAAAGGCAAGGTTGGGGTTAGTTGCAATTGCTTTTTGTAGTGAGAATTGTATTTTGTGGAACTCCGTTCCGTCCTTTCAAGCATGGCCGTTTAGTGATGCCAGCTGACACGGACAGAGCGGGACTCAGAGTGACACTGTCATGCTCTAATAAGGGGCTGTGATTGGATAAGctatatgtattatttatttatttaggccATTTTGAGTTTCCTGTTAGTTTCATATTTATAGTTTTCTTTCTTTCTGACTGTGCTCTCCAAGCAAGGCAAAGTTAATGTGAACaaaatactgtaaatactgtataaAATCTGAATATGTTGAATGAGATTCATTGATTTAAAGTCAGCAGAGGAACAGGATTCAGGAGCAGACGTATGTTTGCAGGGGTTGGGGTCATTTCTACTGGAACTCAGTcaatgcagaagatgaatgtcaTGATTTGAAAAAATATTCTGAAATATTGGTAAAATCTGGGTCGTGGACTTTAATTTTCCTGCAGCCTTTTTGTacttatttattattttaaactTGTTTCTTAAACATTTTCAGTGGTGTTTTGTAAAGACTACCGTGCTGATGGGTGGTGCTTTAATAACAGCCTGTGGTTGCAGAACCATGGAGATCAGCAAACAACCGCACTCTGTGTTGGCACAAATCGTTCTGCGAcaataacatttacattttaaaatgcGATTGTCATTGAACTTTTGGTGCTAACAGGGCAGCCATGAAAACTCAATGTATAGTGAATCAACATCCCCATCATCATTCTCCCTACTCTTCTGACCTGCCTGGACTCTTTTTCTCCCCCTGCTGTGTTTGACCCtggcctttctccctctccctccatttggaaaTAAAGCAGTTTAATAAGCA

Function

GO:

id name namespace
GO:0019229 regulation of vasoconstriction biological_process
GO:0007194 negative regulation of adenylate cyclase activity biological_process
GO:0006940 regulation of smooth muscle contraction biological_process
GO:0030168 platelet activation biological_process
GO:0071875 adrenergic receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004938 alpha2-adrenergic receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU567050 lncRNA downstream 85428 34161934 ~ 34162206 (-) True G499127
TU567018 lncRNA downstream 116071 34131206 ~ 34131563 (-) True G499096
TU567006 lncRNA downstream 125716 34121707 ~ 34121918 (-) True G499084
TU567003 lncRNA downstream 126195 34121202 ~ 34121439 (-) True G499081
TU566996 lncRNA downstream 130379 34117054 ~ 34117255 (-) True G499074
TU567380 lncRNA upstream 120308 34374571 ~ 34374790 (-) True G499440
TU567440 lncRNA upstream 213138 34467401 ~ 34467770 (-) True G499497
TU567441 lncRNA upstream 213726 34467989 ~ 34468195 (-) True G499498
TU567450 lncRNA upstream 223243 34477506 ~ 34478051 (-) True G499507
TU567451 lncRNA upstream 224005 34478268 ~ 34478548 (-) True G499508
XM_036979969.1 mRNA downstream 277431 33953576 ~ 33970203 (-) True LOC110525830
XM_021606282.2 mRNA downstream 296801 33947962 ~ 33950833 (-) True LOC110525832
XR_005052458.1 mRNA downstream 297842 33949722 ~ 33949792 (-) True LOC118965128
XM_021606274.2 mRNA downstream 320589 33882644 ~ 33927045 (-) False kcnip3a
XM_036979966.1 mRNA downstream 320589 33882644 ~ 33927045 (-) True kcnip3a
XM_021606286.2 mRNA upstream 48982 34303245 ~ 34327772 (-) False LOC110525835
XM_021606288.2 mRNA upstream 48982 34303245 ~ 34327773 (-) False LOC110525835
XM_021606285.2 mRNA upstream 48982 34303245 ~ 34327777 (-) False LOC110525835
XM_021606287.2 mRNA upstream 48982 34303245 ~ 34327778 (-) True LOC110525835
NM_001124242.2 mRNA upstream 76919 34331182 ~ 34366489 (-) True piwil2
TU566881 other downstream 206460 34040359 ~ 34041174 (-) True G498960
TU566347 other downstream 910854 33332650 ~ 33336780 (-) True LOC110525812
TU566350 other downstream 917130 33327507 ~ 33330504 (-) True G498484
TU565305 other downstream 1564787 32680042 ~ 32682847 (-) True LOC110525784
TU564492 other downstream 2354985 31843463 ~ 31892649 (-) True G496851
TU569190 other upstream 1511103 35765366 ~ 35767929 (-) True G501142
TU570258 other upstream 2253793 36508056 ~ 36517268 (-) True hk2
TU570775 other upstream 2796440 37050703 ~ 37064989 (-) True vamp8
TU571292 other upstream 2985581 37239844 ~ 37240937 (-) True G503064
TU571387 other upstream 3077221 37331484 ~ 37336552 (-) False G503159

Expression Profile