RNA id: TCONS_00032102


Basic Information

Item Value
RNA id TCONS_00032102
length 616
RNA type processed_transcript
GC content 0.42
exon number 2
gene id XLOC_016279
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 19217586 ~ 19234469 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCAGGAGGGGGCACCAGTGATCGTCATATTCGCATCTGGAATGCTTCCAGTGGCTCTTGTATCAGCTCCTTGGATACTTGTTCACAGGACATGAAGCCAGGATCCTCAACTTGGCACTGAGTCCAGACGGTTCCACGCTGGCTTCAATTGCAGCTGACGAAACCATCAGACTTTGGAAGTGTTTTGAAAAGGAAAAGGATGCTGCCAAGAAACCGAAGCAGGCCAGTGGCAGGATCGTTCAACAAAGTATCCGATAAttttgaaatgctcatttttaatGCCTCCAGCAAACAGCAGTTGGATGTTTCTTTTGAACACCTCCAAATGTTCATTAGAAGCTCCCCTTTAGGTTTGGGTTTTCAAGAACTTGTTCATGTATGCTGTGCCGTCAAGCTCTACACTAGATTTTATTGGACACCTTTCTTGTTTGCGTTCTCGGAGGCGTAATGTTTTTAAAGGGATGAGCATGGCTGCTAAATGGGATTACTAGAACACCATGTCCTTTGAAAGTTAACTTTTCAGTGACTTTCATACTGACATTTTTGCATATTTAACCATCAATGATCTTTAAGTTATGTACAGTAATGTaagttttgcaaataaagtttAAGAGTAA

Function

GO:

id name namespace
GO:1905786 positive regulation of anaphase-promoting complex-dependent catabolic process biological_process
GO:0007049 cell cycle biological_process
GO:0051301 cell division biological_process
GO:0031145 anaphase-promoting complex-dependent catabolic process biological_process
GO:1904668 positive regulation of ubiquitin protein ligase activity biological_process
GO:0005680 anaphase-promoting complex cellular_component
GO:0010997 anaphase-promoting complex binding molecular_function
GO:1990757 ubiquitin ligase activator activity molecular_function
GO:0097027 ubiquitin-protein transferase activator activity molecular_function

KEGG:

id description
ko04120 Ubiquitin mediated proteolysis
ko04110 Cell cycle
ko04111 Cell cycle - yeast
ko04113 Meiosis - yeast
ko04114 Oocyte meiosis
ko05203 Viral carcinogenesis
ko05166 Human T-cell leukemia virus 1 infection
ko04121 Ubiquitin system
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-040426-2044 Predicted to enable anaphase-promoting complex binding activity and ubiquitin ligase activator activity. Predicted to be involved in anaphase-promoting complex-dependent catabolic process and positive regulation of anaphase-promoting complex-dependent catabolic process. Predicted to act upstream of or within cell division and positive regulation of ubiquitin protein ligase activity. Predicted to be part of anaphase-promoting complex. Is expressed in proliferative region. Orthologous to human CDC20 (cell division cycle 20).

Ensembl:

ensembl_id ENSDART00000169000

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033799 lncRNA downstream 36169 19152372 ~ 19181569 (-) False XLOC_016278
TCONS_00032099 lncRNA downstream 36169 19152372 ~ 19181569 (-) True XLOC_016278
TCONS_00033798 lncRNA downstream 36185 19152372 ~ 19181553 (-) False XLOC_016278
TCONS_00033797 lncRNA downstream 112296 19100422 ~ 19105442 (-) False XLOC_016276
TCONS_00032096 lncRNA downstream 386944 18827281 ~ 18830794 (-) True XLOC_016275
TCONS_00032104 lncRNA upstream 29837 19252270 ~ 19269297 (-) True XLOC_016280
TCONS_00033800 lncRNA upstream 156678 19379111 ~ 19382322 (-) True XLOC_016283
TCONS_00032114 lncRNA upstream 337659 19560092 ~ 19565273 (-) True XLOC_016288
TCONS_00033360 lncRNA upstream 370021 19592454 ~ 19595061 (-) True XLOC_016291
TCONS_00032118 lncRNA upstream 379263 19601696 ~ 19621644 (-) True XLOC_016292
TCONS_00032098 mRNA downstream 89353 19119847 ~ 19128385 (-) True XLOC_016277
TCONS_00032097 mRNA downstream 108434 19100422 ~ 19109304 (-) True XLOC_016276
TCONS_00032094 mRNA downstream 386955 18698388 ~ 18830783 (-) False XLOC_016275
TCONS_00032095 mRNA downstream 387016 18703125 ~ 18830722 (-) False XLOC_016275
TCONS_00032090 mRNA downstream 1270349 17578320 ~ 17947389 (-) False XLOC_016274
TCONS_00032103 mRNA upstream 8685 19231118 ~ 19234329 (-) True XLOC_016279
TCONS_00032105 mRNA upstream 58396 19280829 ~ 19354622 (-) False XLOC_016281
TCONS_00032106 mRNA upstream 59360 19281793 ~ 19321927 (-) True XLOC_016281
TCONS_00032110 mRNA upstream 296087 19518520 ~ 19520324 (-) False XLOC_016285
TCONS_00032111 mRNA upstream 296243 19518676 ~ 19520690 (-) True XLOC_016285
TCONS_00032082 other downstream 1824930 17339418 ~ 17392808 (-) False XLOC_016272
TCONS_00032083 other downstream 1825019 17353831 ~ 17392719 (-) True XLOC_016272
TCONS_00032073 other downstream 2273347 16944272 ~ 16944391 (-) True XLOC_016269
TCONS_00032069 other downstream 2601683 16615940 ~ 16616055 (-) True XLOC_016267
TCONS_00032063 other downstream 2705316 16508824 ~ 16512422 (-) True XLOC_016264
TCONS_00032107 other upstream 140365 19362798 ~ 19363161 (-) True XLOC_016282
TCONS_00032108 other upstream 283878 19506311 ~ 19513296 (-) False XLOC_016284
TCONS_00032109 other upstream 285667 19508100 ~ 19512644 (-) True XLOC_016284
TCONS_00032112 other upstream 301153 19523586 ~ 19523683 (-) True XLOC_016286
TCONS_00032113 other upstream 317247 19539680 ~ 19559171 (-) True XLOC_016287

Expression Profile

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