RNA id: TCONS_00032477


Basic Information

Item Value
RNA id TCONS_00032477
length 338
RNA type TR_V_gene
GC content 0.39
exon number 2
gene id XLOC_016505
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 31882407 ~ 31883178 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGAACTTCAGTGAATTTGTTTTGATTAACGTTAATTATCTTTTAAATGGACAAACTACACATGCTAAAGTTGTGTTTAAGGCCAAAACTAGAACTGCTATTATCAAATGGACCGTGGAATCGTCTCTTCTGTCCAACGCTCTCCACTTGTACAAAGGTACATCACAGAAAGGTTTAGAAAGGATCATGCATTTCGATGGTGGAGCAAAAAGAGGCACAGCAATCGTACCAAAATATTCTGGATTGGTGAGTGATAAGCAAGTGACTCTGACTATCTCAAAACTGGAGCCCAGTGATGAAGGAACATATTTCTATGCGCAGTGGGATTCTAACAACAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000171132

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033868 lncRNA downstream 267663 31612853 ~ 31614748 (-) True XLOC_016485
TCONS_00032444 lncRNA downstream 269134 31612853 ~ 31613277 (-) False XLOC_016485
TCONS_00033867 lncRNA downstream 773464 31092749 ~ 31108947 (-) True XLOC_016480
TCONS_00033866 lncRNA downstream 782534 31092749 ~ 31099877 (-) False XLOC_016480
TCONS_00033865 lncRNA downstream 784708 31092749 ~ 31097703 (-) False XLOC_016480
TCONS_00032483 lncRNA upstream 14820 31897668 ~ 31898907 (-) True XLOC_016508
TCONS_00033870 lncRNA upstream 311977 32194825 ~ 32201587 (-) True XLOC_016510
TCONS_00032488 lncRNA upstream 334617 32217465 ~ 32220224 (-) False XLOC_016511
TCONS_00033871 lncRNA upstream 334617 32217465 ~ 32232159 (-) False XLOC_016511
TCONS_00032491 lncRNA upstream 353387 32236235 ~ 32262287 (-) True XLOC_016511
TCONS_00032462 mRNA downstream 49064 31830183 ~ 31833347 (-) True XLOC_016490
TCONS_00032461 mRNA downstream 81890 31781843 ~ 31800521 (-) True XLOC_016489
TCONS_00032460 mRNA downstream 83694 31781843 ~ 31798717 (-) False XLOC_016489
TCONS_00032459 mRNA downstream 90778 31781843 ~ 31791633 (-) False XLOC_016489
TCONS_00032458 mRNA downstream 114584 31762852 ~ 31767827 (-) True XLOC_016488
TCONS_00032480 mRNA upstream 8487 31891335 ~ 31937005 (-) False XLOC_016508
TCONS_00032482 mRNA upstream 9517 31892365 ~ 31936966 (-) False XLOC_016508
TCONS_00032481 mRNA upstream 9517 31892365 ~ 31936966 (-) False XLOC_016508
TCONS_00032484 mRNA upstream 233003 32115851 ~ 32119196 (-) True XLOC_016509
TCONS_00032485 mRNA upstream 332424 32215272 ~ 32262287 (-) False XLOC_016511
TCONS_00032476 other downstream 1779 31880194 ~ 31880632 (-) True XLOC_016504
TCONS_00032475 other downstream 4586 31877471 ~ 31877825 (-) True XLOC_016503
TCONS_00032474 other downstream 7575 31874398 ~ 31874836 (-) True XLOC_016502
TCONS_00032473 other downstream 8941 31873021 ~ 31873470 (-) True XLOC_016501
TCONS_00032472 other downstream 12857 31869121 ~ 31869554 (-) True XLOC_016500
TCONS_00032478 other upstream 2733 31885581 ~ 31886019 (-) True XLOC_016506
TCONS_00032479 other upstream 6127 31888975 ~ 31889408 (-) True XLOC_016507
TCONS_00032489 other upstream 337061 32219909 ~ 32232159 (-) False XLOC_016511
TCONS_00032495 other upstream 410553 32293401 ~ 32293516 (-) True XLOC_016513
TCONS_00032496 other upstream 472580 32355428 ~ 32356050 (-) True XLOC_016512

Expression Profile

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