RNA id: TCONS_00033918


Basic Information

Item Value
RNA id TCONS_00033918
length 293
lncRNA type read_through
GC content 0.34
exon number 2
gene id XLOC_016745
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 42665902 ~ 42748662 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTGATTTTCAATCTGTTTCTTCCATTTTATTAAGGTTGCTCCATGTATACAAGTACATATATCTCAGTTcttccatttgtttttgttgttttttttttcattttaccaGGGAATTTTAGAAAGAAAAGGAATGATAGAGaaagaaacagagagaaagagagagagtgtgtgttaatTCAAATGAAATATCACCTGTAGCAACATTATCTCCACAGCAACCAAAAATACACAACGATAGGGCCAACCACTGACATGCAAAACACACAACCTcacacatcaaacacacacacac

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033917 lncRNA downstream 36984 42628559 ~ 42628918 (-) False XLOC_016744
TCONS_00032846 lncRNA downstream 53495 42609381 ~ 42612407 (-) False XLOC_016744
TCONS_00033916 lncRNA downstream 68309 42596228 ~ 42597593 (-) True XLOC_016743
TCONS_00033915 lncRNA downstream 69372 42595924 ~ 42596530 (-) False XLOC_016743
TCONS_00033914 lncRNA downstream 634916 42027457 ~ 42030986 (-) False XLOC_016728
TCONS_00033922 lncRNA upstream 8229 42756891 ~ 42771978 (-) False XLOC_016749
TCONS_00033396 lncRNA upstream 10891 42759553 ~ 42764475 (-) True XLOC_016749
TCONS_00033397 lncRNA upstream 187219 42935881 ~ 42936238 (-) True XLOC_016751
TCONS_00033398 lncRNA upstream 214200 42962862 ~ 42978612 (-) True XLOC_016754
TCONS_00033400 lncRNA upstream 232542 42981204 ~ 42983010 (-) False XLOC_016755
TCONS_00032845 mRNA downstream 37874 42605392 ~ 42628028 (-) False XLOC_016744
TCONS_00032843 mRNA downstream 107353 42496523 ~ 42558549 (-) True XLOC_016742
TCONS_00032842 mRNA downstream 113236 42496498 ~ 42552666 (-) False XLOC_016742
TCONS_00032839 mRNA downstream 173701 42422390 ~ 42492201 (-) False XLOC_016741
TCONS_00032849 mRNA upstream 27562 42776224 ~ 42864472 (-) False XLOC_016750
TCONS_00032850 mRNA upstream 27562 42776224 ~ 42871286 (-) False XLOC_016750
TCONS_00032851 mRNA upstream 66280 42814942 ~ 42827336 (-) False XLOC_016750
TCONS_00032852 mRNA upstream 66565 42815227 ~ 42843797 (-) True XLOC_016750
TCONS_00032853 mRNA upstream 193890 42942552 ~ 42960353 (-) False XLOC_016752
TCONS_00032837 other downstream 250114 42404061 ~ 42415788 (-) True XLOC_016740
TCONS_00032833 other downstream 290793 42372009 ~ 42375109 (-) True XLOC_016738
TCONS_00032811 other downstream 719006 41945975 ~ 41946896 (-) True XLOC_016725
TCONS_00032808 other downstream 1045790 41617207 ~ 41620112 (-) True XLOC_016721
TCONS_00032800 other downstream 1244180 41421606 ~ 41421722 (-) True XLOC_016717
TCONS_00032856 other upstream 213566 42962228 ~ 42962344 (-) True XLOC_016753
TCONS_00032894 other upstream 1444137 44192799 ~ 44199697 (-) False XLOC_016779
TCONS_00032911 other upstream 1774194 44522856 ~ 44524381 (-) True XLOC_016786
TCONS_00032916 other upstream 2009387 44758049 ~ 44760347 (-) True XLOC_016790
TCONS_00032917 other upstream 2014420 44763082 ~ 44763375 (-) True XLOC_016791

Expression Profile

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