RNA id: XM_036984639.1


Basic Information

Item Value
RNA id XM_036984639.1
length 2796
RNA type mRNA
GC content 0.51
exon number 17
gene id LOC110529169
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 6855891 ~ 6966251 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cggagagggagaggagacagaaaaCAAAGGAgaaagactgagagggagaggagacagaaaacagaggagaaagaCTGAGAAGAAAGAGAacgaaggagagggagaggagacagagctcATCATTGTCTACAGTATGAACCAGTCCAGCAAGGACCAGAGTGGAGTGGGGACAGCAGACCCTGATCAGGACTCTCCCAACGTCATCGTCTACAGAAAGATTGAGGAGATAGTGACTCGTATCCAGGATGAGACTGAGGGCGTTCCCATCAGAACTGTCAAGAGCTTCCTGACCAAGATACCCAGCGTCGTCACAGGTTCAGACATAGTGCAGTGGCTGATGAAGAACCTAGCCATTGAAGATCCAGCTGAGGCCATCCACATCGGGAGTCTGATTGCTGCTCAGGGATATCTCTTCCCCATCTCTGATCACGTTCTGTCACTCAAAGACGATGGAACCTTCTATCGCTTCCAGGCTCCATATTTCTGGCCTTCTAACTGCTGGGAGCCAGAGAACACAGACTATGCTATCTATCTGTGCAAGAGGACCATGCAGAACAAGACGCGTCTGGAGCTGGCTGATTATGAGGCGGAGAACCTAGCCAGACTACAGAGAGCCTTCACTAGGAAGTGGGAGTTTGTCTTCATGCAGGCCGAGGCTCAGGTCAAgatTGACACGAAAAAGGATAGAATTGAGAGGAAGATTCTAGACAGTCAAGAAAGAGCTTTCTGGGATGTCCACAGGcctgtgCCAGGTTGTGTGAACGTCACAGAGATGGACATCAGGAAATGCAGACGTATGAAGAACCCACAGAGAGTCAAGAAGTCAGTGTATGGACTGATAGAGGAGGGTCAGTCACAGAGCCCGGTACACATACCCTCACAACTAGCCAGGAAAGGCACTAAAGAGGACGTGGAGAAAGAGATTGTGTTTCTGAACAGCCAGTTGGACCGACACTGTATAAAGGTTTCTAAAGTCGCTGAGAGTCTGATGACCTACACTGAGCAGTACCAGGAGTATGACCCGTTTGTGGTGTCACCAGAACCCTCCAACCCCTGGACCAGTGACGACCTCTCCTTCTGGGACCTAGAGGCCAGTAAGGAGCCCAGTCAACAGAGAGTGAGGAAGTGGGGTTTTTCTCTAGAAGAAGCTCTGAAGGATCCGGCAGGTCGCGATCAGTTCCTCAAGTTCCTGGAATCAGAGTTCAGCTCAGAGAACCTACAGTTTTGGTTGGCTGTCCAAGATCTGAAGCGGCAGCCTCTGGAGAACGTGGCAGAACGGGCTCAGGAGATCTGGACAGAGTTTCTGGCAGAAGGCGCTTCCAGCTCCATCAACCTGGACTCACACAGCTACGAACGCACCAGCGCCAACCTTAAAGACCCGGGACGATACAGCTACGAAGACGCTCAGgACCACATCTATAAGCTGATGAAGAGTGACAGCTACACACGGTACCTCCGCTCCAACGCTTACCAGAATCTTCTGATGGCCAGGAAGAagCCTGAGACGGAGCAGCAGCAGGGAAGACGCACCTCTCTGGAGAAGTTCacacgcagcgtgGGAAAGTCACTGACGGGCAAGCGGCTGACGGGCCTGATGTCCTGAACCAGGCCTGGGGCTAGAGTAAGACAGCCATGCCCACTGGAGCTGATCCACTGTGGGGAGAGTGGTGTTGAGGCTTAGAGGCCTTACTGGGGCCTGGACACAACGTCGCCCACATAACTGACTCCAGATCAGTTTCCTGAGCTCCAGCGGAGGACAGACATCATGCAATAAGTCACTTAGATCTGACACTGGGCGAGTGGCTGCGTCTCAAGTGGCACCATGTCgtcttatatagtgcactatttctgaCTAGAGCCCATGTGATTTGTGCAATCCATACAAGAAAGTGTACACTTTGGAGACTGGCAACATCCTAGCCTGGGCCTTAGTCTAAAGTAGTGGAGACTGGCAACATCTTATCCTGGGCCTTAGTCTAAAGTAGTGGAGACTGGCAACATCCTAGCCTgggccttggtctaaagtagtggcgACTGGCAACATCCTAGCCTGGGCCTTAGTCTAAAGTAGTGGAGACTGGCAACATCATAGCCTGGGCCttagtctaaagtagtggacaCTGGCAACATCCTAGCCTGGGCCTTAGTCTAAAGTAGTGGAGACTGGCAACATCCTAGCCTGGGCATTAGTCTAAAGTAGTGGAGACTGGCAACATCTTATCCTGGGCCTTAGTCTAAAGTAGTGGCGACTGGCAACATCCTAGCCTGGGCATTAGTCTAAAGTAGTGGAGACTGGCAACATCCTAGCCTGGGCCTTAGTCTAAAGTAGTGGAGACTGGCAACATCTTATCCTGGGCCTTAGTCTAAAGTAGTGGAGACTGGCAACATCCTAGCCTGGGCCTTAGTCTAAAGTAGTGGAAACTGGCAACATCCTAGCCTGGGCCTTAGTCTAAAGTAGTGGAGACTGGCAACATCCTAGCCTGGGCATTAGTCTAAAGTAGTGGAGACTGGCAACATCCTAGCCTGGGCCTTAGTCTAAAGTAGTGGAGACTGGCAACATCCTAGCCTGGGCCTTAGTCTAAAGTAGTGGAGACTGGCAACATCCTAGCCTGGGCattagtctaaagtagtgcactatgaagacAATAAGGTGCGATTTGGGACGCAGTCACTGTGTAGTTTATCAACATATAACTctgcccgctctctctctctctccctccctgtctctctctctctctctctctctccctctggctctctctctctccctctggctctctctctctctctccc

Function

GO:

id name namespace
GO:0043547 positive regulation of GTPase activity biological_process
GO:0038032 termination of G protein-coupled receptor signaling pathway biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0005834 heterotrimeric G-protein complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005096 GTPase activator activity molecular_function
GO:0004871 obsolete signal transducer activity molecular_function

KEGG:

id description
K16449 RGS; regulator of G-protein signaling

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU762060 lncRNA downstream 4573 6849937 ~ 6851318 (-) True G669052
TU762056 lncRNA downstream 12802 6842439 ~ 6843089 (-) True G669049
TU762052 lncRNA downstream 17122 6838297 ~ 6838769 (-) True G669046
TU762051 lncRNA downstream 18318 6837078 ~ 6837573 (-) True G669045
TU762022 lncRNA downstream 67260 6788082 ~ 6788631 (-) True G669018
TU762157 lncRNA upstream 20003 6986254 ~ 6986833 (-) True G669122
TU762104 lncRNA upstream 23599 6989850 ~ 6991612 (-) False G669087
TU762105 lncRNA upstream 23599 6989850 ~ 6991612 (-) False G669087
TU762106 lncRNA upstream 23599 6989850 ~ 6991612 (-) False G669087
TU762190 lncRNA upstream 83172 7049423 ~ 7049733 (-) True G669139
XM_036984633.1 mRNA downstream 53988 6786377 ~ 6801903 (-) False wdr21
XM_036984631.1 mRNA downstream 54571 6786377 ~ 6801320 (-) False wdr21
XM_036984632.1 mRNA downstream 54665 6786377 ~ 6801226 (-) False wdr21
XM_036984634.1 mRNA downstream 55861 6786377 ~ 6800030 (-) False wdr21
LOC118965487 mRNA downstream 94347 6759400 ~ 6761544 (-) False LOC118965487
XM_036986820.1 mRNA upstream 34034 7000285 ~ 7234525 (-) True sipa1l1
XM_036984641.1 mRNA upstream 290666 7256917 ~ 7287386 (-) False LOC110529175
XM_036984640.1 mRNA upstream 290666 7256917 ~ 7287390 (-) True LOC110529175
XM_036984643.1 mRNA upstream 374448 7340699 ~ 7369515 (-) False LOC110529304
XM_036984646.1 mRNA upstream 374448 7340699 ~ 7369515 (-) False LOC110529304
TU761993 other downstream 61704 6786532 ~ 6794187 (-) True wdr21
TU761008 other downstream 571870 6206558 ~ 6284021 (-) True G668192
TU761057 other downstream 574251 6280196 ~ 6281640 (-) True G668238
TU760267 other downstream 1304646 5548803 ~ 5551245 (-) True znf395b
TU759716 other downstream 2365671 4488806 ~ 4490220 (-) True G667122
TU762099 other upstream 23599 6989850 ~ 6991612 (-) False G669087
TU762102 other upstream 23599 6989850 ~ 6991612 (-) False G669087
TU762103 other upstream 23599 6989850 ~ 6991612 (-) False G669087
TU762107 other upstream 23599 6989850 ~ 6991612 (-) False G669087
TU762108 other upstream 23599 6989850 ~ 6991612 (-) True G669087

Expression Profile