RNA id: XM_036984634.1


Basic Information

Item Value
RNA id XM_036984634.1
length 2327
RNA type mRNA
GC content 0.54
exon number 11
gene id wdr21
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 6786377 ~ 6801903 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATGATCACTGAGGACGAGAGGCCCAGGAAGAAAGCACCAAGAGCAGGCCTGAACTCAGCTCTGTTGCTGCAGAAAAGACACCTGGGTCTGCTACCTGGGAACTCTTACAGCTGATCCATGAGGTGAAGGTGAGTGGGATGAGACGTCACAGACTGGAGGTCCAGAGCTCTGAAAGCAGCAGTCCCAACACAGACCACTTTAGACTCATAGTgggTGACTCTGCATGTGAGCGAGTGTTCACGGTTAACGACGTGTCTCACGGAGGCTGCAAGTACGGCATCATGAACTTCAGAGGCTGCAGCAGGGGCTCCCTGTCCGTCAAGATGTGTGACAACCTCTACTTTACAAATAGaaagGTGAACTCTATCTGCTGGGCTTCCGTCACCCACTCTGACTCACACGTCCTCCTGTGTCTGGTGGGCATGGCAGAGACTCCTGGCTGTGTCAGTTTACTACCAGCCTCGCTCTTCAGCAACTCCAACCCAGACCAGCCGGGGATGCTGTGTAGTTTTAAGATCTCTACAGCCTGGTCCTGTGCCTGGTGTCTCAACCCTCAGGCTGACAAAACATTTAGCACGGGTCTGTCTCGCAGGGTGATAGTGACGGACGCAGTGACGGGCAGGAGACAGACCTATGGCATCGGCAGTGATGTGCTGGCACAGCAGTTTGCCCTCAGGgcTCCGGTCCTGTTTAATGGCTGTAGGTCAGGAGAGATCTTCAGTATCGACCTGCGTCAGAAAGGCAGACGGGACCACAGCTGGAAGGCCTGCAGGTTCTCCCAGGACTCTGCTATCACCTCCGTACGAATACTACAGGATGAGAACTACCTACTGGCCGCGGACATGATTGGAGAGATCAAGCTGTGGGATGTACGAGTAACAAAACCAGTGCGGAAGTACGAGGGTCATCATAACCAACACGCCTACTTACCCCTCCACGTCAACGAAGCTGAGGGACTGCTGATGGCTGTGGGTCAGGACTGCTACACCCGTCTGTGGTCTCTGGGAGACGGCCAGCTCCTGAGGACTATCCCATCTCCCCACCCTGCTGGAAAGGACATGATCCCCAGCGTGGTCTTCTCTTCTCAGCTAGGAGGCAACAGAGGCCTGCCTGGTCTCCTCATGGCTGTCAGGCACGATCTGTACTACTTCCCTTATAACAGTGACTaccaggagggaggaggggtagtGACTGAGGCAGCCTGCTAGGGGAGGGCTTGACTGAGGCAGCCTGCTAGGGGAGGGCTTGACTGAGGCAGCCTGCTAGGGGAGGGCTTGACTGAGGCAGCCTGCTAGGGGAGGGCTTGACTGAGGCAGCCTGCTAGGGGAGGGCTTGACTGAGGCAGCCTGCTAGGGGAGGGCTTGACTGAGGCAGCCTGTTAGGGGAGGGCTTGACTGAGGCAGCCTGCTAGGGGAGGGCTTGACTGAACCTTTCTTTGCAAAGTAACTGGAATGAAGGAGACTCTTACTGCCTAAAGTTATCAGCCTGGATCTTTAAGACTTCAAGTGGAGATTTGGGTCTGACCGTAGAGCTGCGAAGTGGAGAGTTGGGTCTGACCGTAGAGCTGCGATGTCGAGAGTTGGGTCTGACCGTAGAGCTGCGAAGTGGAGAGTTGGGTCTGACCGTAGAGCTGCGAAGTGGAGAGTTGGGTCTGACCGTAGAGCTGCGAAGTGGAGAGTTGGGTCTGACCGTAGAGCTGCGAAGTGGAGAGTTGGGTCTGACCGTAGAGCTGCGAAGTGGAGAGTTGGGTCTGACCGTAGAGCTGCGAAGTGGAGAGTTGGGTCTGACCGTAGAGCTGCGAAGTGGAGAGTTGGGTCTGACCGTAGAGCTGCGAAGTGGAGAGTTGGGTCTGACCGTAGAGCTGCGAAGTGGAGAGTTGGGTCTGACCGTAGAGCTGCGAAGTGGAGAGTTGGGTCTGACCGTAGAGCTGGGTCTGACCGTAGAGCTGCGAAGTGGAGAGTTGGGTCTGACCGTAGAGCTGCGAAGTAGAGAGTTGGGTCTGACCGTAGAGCTGCGACGTCGAGAGTTGGGTCTGACCGTAGCGCTGCGAAGTGGAGAGTTGGGTCTGACAGTAGAGCTGCAGATGGACTGCTGGAACATGGATCCAGTGCTCTACTATATTTGTCTACCAGTGAACCCTGAATTATGTCCACAGAAACTGCAATTCATCAACTGCTATTATTGaagttgttttttttgtctttataataataataataataacggtAATTAATCATGTTTATACGATTCAAAACAATGTATTTTATCTATGGTGATTGAATGGATGGCTTGGaattattaaaaaaaacatagcattGTCAACAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU762001 lncRNA downstream 24570 6760203 ~ 6761807 (-) False LOC118965487
TU762005 lncRNA downstream 24570 6760513 ~ 6761807 (-) False LOC118965487
TU762006 lncRNA downstream 24738 6760513 ~ 6761639 (-) True LOC118965487
TU761967 lncRNA downstream 121197 6664825 ~ 6665180 (-) True G668978
TU761960 lncRNA downstream 134791 6650221 ~ 6651586 (-) False G668975
TU762051 lncRNA upstream 37048 6837078 ~ 6837573 (-) True G669045
TU762052 lncRNA upstream 38267 6838297 ~ 6838769 (-) True G669046
TU762056 lncRNA upstream 42409 6842439 ~ 6843089 (-) True G669049
TU762060 lncRNA upstream 49907 6849937 ~ 6851318 (-) True G669052
TU762075 lncRNA upstream 88651 6888681 ~ 6888975 (-) True G669064
LOC118965487 mRNA downstream 24833 6759400 ~ 6761544 (-) False LOC118965487
XM_021611407.2 mRNA downstream 68594 6695982 ~ 6717783 (-) True LOC110529288
XM_021611408.2 mRNA downstream 68895 6695982 ~ 6717482 (-) False LOC110529288
XM_021611414.2 mRNA downstream 741451 5938942 ~ 6044926 (-) False LOC110529295
XM_036984625.1 mRNA downstream 1046806 5649496 ~ 5739571 (-) True LOC110529170
XM_036984639.1 mRNA upstream 55861 6855891 ~ 6966251 (-) True LOC110529169
XM_036986820.1 mRNA upstream 200255 7000285 ~ 7234525 (-) True sipa1l1
XM_036984641.1 mRNA upstream 456887 7256917 ~ 7287386 (-) False LOC110529175
XM_036984640.1 mRNA upstream 456887 7256917 ~ 7287390 (-) True LOC110529175
XM_036984643.1 mRNA upstream 540669 7340699 ~ 7369515 (-) False LOC110529304
TU761008 other downstream 502356 6206558 ~ 6284021 (-) True G668192
TU761057 other downstream 504737 6280196 ~ 6281640 (-) True G668238
TU760267 other downstream 1235132 5548803 ~ 5551245 (-) True znf395b
TU759716 other downstream 2296157 4488806 ~ 4490220 (-) True G667122
TU758186 other downstream 3116230 3668232 ~ 3670147 (-) True G665927
TU762099 other upstream 189820 6989850 ~ 6991612 (-) False G669087
TU762102 other upstream 189820 6989850 ~ 6991612 (-) False G669087
TU762103 other upstream 189820 6989850 ~ 6991612 (-) False G669087
TU762107 other upstream 189820 6989850 ~ 6991612 (-) False G669087
TU762108 other upstream 189820 6989850 ~ 6991612 (-) True G669087

Expression Profile