RNA id: XM_036984625.1


Basic Information

Item Value
RNA id XM_036984625.1
length 2614
RNA type mRNA
GC content 0.50
exon number 8
gene id LOC110529170
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 5649496 ~ 5739571 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTATACGTTACCTGTGCCTGCTCGCTACTCTCCCCCCATTTGAACTGGATTGGCTCAGAGCGGGTTGGAGATTGTTCAGCGAGGGATTCGAAGACGCACGCCAAATGACTCCAGGAACAGCATTGACCTGAGCTCAACACAGTGGAATCATGACCCTAGCAGCGTACAGAGAGAAGTTGAAAGAGCTCCCCCTGGTGTCTCTGTTCTGCTCCTGCATCAACCCTCAGACCATCGACTGTAAACCCACGTACAAAGCAGAAGATGCGGTGGATCTGGGCTGGTGTGTGATAAAGGACGTGGAGGTGATAGAGTTGAACAAGCGTTCTTCGGGCCAGGCCTTCGAGGTCATCCTGAAGCCTCCGTCATTTGATGGCGTCCCAGAGTTCAACGCTACCATGCCCCAACGCAGAGAACTCTCCATGGAGGAGATCCAGAAGAAACTAGAggctgcagaggagaggaggaagTGCCAAGAGGCTGAGCTGCGGAAGCACCtggcagagaagagagagcacgagagagaggtgATTCAGAAGGCCTTAGAGGAGAACAATAACTTCATCAAGAACGCCAAGGAGAAGCTGGAGCAGAAGATGGAGGCCAACAAGGAGAACAGAGAGGCTCTACTGGCGGCCATGTTGGAACGACTGCAGGAGAAGGACAAGCATGCAGAAGAGGTGAGGAAAAAGGTACTAGCCTTGGCAGATGTGGTGGATCTGGGCTGGTGTGTGATAAAGGACGTGGAGGTGATAGAGTTGAACAAGCGTTCGTCGGGCCAGGCCTTCGAGGTCATCCTGAAGCCTCCGTCATTTGATGGCGTCCCAGAGCTCAACGTTACCATGCCCCAACGCAGGGAACTCTCCATGGAGGAGATCCAGAAGAAACTAGAtgctgcagaggagaggaggaagTGTCAGGAGGCTGAGTTGCTGAAGCACCtggcagagaagagagagcacgagagagaggtgATTCAGAAGGCCTTAGAGGAGAACAACAACTTCATCAAGAACGCCAAGGAGAAGCTGGAGCAGAAGATGGAGGCCAACAAAGAGAACAGAGAGGCTCTACTGGCGGCCATGTTGGAACGACTGCAGGAGAAGAATAAACACGGCGAAGAGGTGAGGAAGAAAAAAAGAAGTGAAGGAGGAAGCCAGCTGGAAGACGAGTGGAGCGAGGGAGTGGGTTTTGTGagtccataaaaaaaaaacagacctgAAAACAAGCCAATCTGAACTATGAACACGGGAGTCAATGTTCATGTTAATAATGTATTCGGTAACGAATTGGAACAAGTGTACAAAACTAAACAGGGAttccacaacacacaacaaaaaCATTGTGATGAAGTAAAAGAGACAAGGATGTGTCTGGCTGGCAATGTAAGGTGCACCAGGGTGTGAGTGGATCTGGGTGTGAATGGATGTTTTAATGACGATGTTAATTATGTGGGGACAGACAGAGTGAATCTGGCGTTTGTGCTGGAACACAGTGGAGTGGTAGGTTATCAATATGGTGCCTCAGTCAGCGCCGAAACATACAGTAGCACACCCTCAGAGCCCACTATCCCACTAGCTGACTGAACACACCCTCAGAGCCCACTATCGCAGAGCTGACTGAACACACCCTCAGAGCCCACTATCCCACTAGCTGACTGAACACACCCTCAGAGCCCACTATCACAGAGCTGACTGAACACACCCTCAGAGCCCACTATCCCAGAGCTGACTGAACACACCCTCAGAGCCCACTATCCCACTAGCTGAATTAACACACCCTCAGAGCCCACTATCGCAGAGCTGACTGAACACACCCTCAGAGCCCACTATCCCAGAGCTGACTGAACACACCCTCAGAGCCCACTATCCCAGAGCTGACTGAACACACCCTCAGAGCCCACTATCCCAGAGCTGTCTGAACACACCCTCAGAGCCCACTATCCCAGAGCTGACTGAACACACCCTCAGAGCCCACTATCCCAGAGCTGACTAAACACACCCTCAGAGCCCACTATCCCAGAGCTGACTGAACACACCCTCAGAGCCCACTATCCCAGAGCTGACTGAACACACCCTCAGAGCCCACTATCCCAGAGCTGACTGAACACACCCTCAGATCCCACTATCCCAGAGCTGACTGAACACACCCTCAGACCCCACTATCCCACTAGCTGACTAAAACACCCTCAGAGCCCACTATCCCAGAGCTGACTGAACACACCCTCAGAGCCCACTATCCCACTAGCTGACTGAACACACCCTCGGAGCCCACTATCCCACTAGCTGACTAAACAACATCCACACTCTGTATCTCACTTGCAGGCGCCTGCAACACATCAAAATGATTTATAGTGTAGATACGTTTCTCCCTACAGCTTTATCGGGATGCTGTAACCAGCTCATGCACCATTTTGAATTTACCGGGGAACACTGTCAATGATAAATCATTTGTGTATATCAGACAAAAGATTGGATTGTGTCATTGGAAAAGGCTAAATATGTCTCAAATACACTCAAataattttagcaaatgtattaaaaaggacatacagaaatatctaatttacgtaagtattcaaaaCAGTCAATAAATGTTTGAATCCACTTTGGCATCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU760568 lncRNA downstream 5178 5643866 ~ 5644318 (-) True G667822
TU760296 lncRNA downstream 20019 5600525 ~ 5629477 (-) True G667587
TU760305 lncRNA downstream 63947 5585070 ~ 5585549 (-) True si:dkey-229d11.5
TU760283 lncRNA downstream 75046 5573878 ~ 5574450 (-) True G667580
TU760279 lncRNA downstream 85467 5562897 ~ 5564029 (-) True G667577
TU760589 lncRNA upstream 17198 5756769 ~ 5789165 (-) False G667829
TU760637 lncRNA upstream 27898 5767469 ~ 5768210 (-) True G667870
TU760587 lncRNA upstream 47298 5786869 ~ 5789116 (-) False G667829
TU760588 lncRNA upstream 47298 5786869 ~ 5789165 (-) True G667829
TU760642 lncRNA upstream 57032 5796603 ~ 5797155 (-) True G667874
XM_036986816.1 mRNA downstream 62861 5583845 ~ 5586635 (-) False si:dkey-229d11.5
XM_036984619.1 mRNA downstream 97946 5535756 ~ 5551550 (-) False znf395b
XM_036984617.1 mRNA downstream 97947 5535756 ~ 5551549 (-) False znf395b
XM_036984616.1 mRNA downstream 97952 5535756 ~ 5551544 (-) False znf395b
XM_036984618.1 mRNA downstream 97960 5535756 ~ 5551536 (-) False znf395b
XM_021611414.2 mRNA upstream 199371 5938942 ~ 6044926 (-) False LOC110529295
XM_021611408.2 mRNA upstream 956411 6695982 ~ 6717482 (-) False LOC110529288
XM_021611407.2 mRNA upstream 956411 6695982 ~ 6717783 (-) True LOC110529288
LOC118965487 mRNA upstream 1019829 6759400 ~ 6761544 (-) False LOC118965487
XM_036984634.1 mRNA upstream 1046806 6786377 ~ 6800030 (-) False wdr21
TU760267 other downstream 98251 5548803 ~ 5551245 (-) True znf395b
TU759716 other downstream 1159276 4488806 ~ 4490220 (-) True G667122
TU758186 other downstream 1979349 3668232 ~ 3670147 (-) True G665927
TU758017 other downstream 2127873 3520790 ~ 3521623 (-) True G665797
TU757924 other downstream 2231208 3417113 ~ 3418288 (-) True G665718
TU761008 other upstream 466987 6206558 ~ 6284021 (-) True G668192
TU761057 other upstream 540625 6280196 ~ 6281640 (-) True G668238
TU761993 other upstream 1046961 6786532 ~ 6794187 (-) True wdr21
TU762099 other upstream 1250279 6989850 ~ 6991612 (-) False G669087
TU762102 other upstream 1250279 6989850 ~ 6991612 (-) False G669087

Expression Profile