RNA id: XM_036984617.1


Basic Information

Item Value
RNA id XM_036984617.1
length 4234
RNA type mRNA
GC content 0.51
exon number 10
gene id znf395b
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 5535756 ~ 5551550 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACGTATCAAAAATAGGACAACGCATCTCTGGGGATGGTGAGCTAGCCTATTTTCTCTGGCGCGACTAtccctctgtctgtttgtgtttgtgtgtctgtgagctGAGGGCATCATTTTGCTTCCGTAACCTATCACCCAGATCTGTCGTTGTGCAGTCTCAGTGCAGAGCTGCAGACCGAGTTCAGGCGCTGTTGCCAGCTGTCGCGCTCGGCATTGCTCCACGACACGCACACACGTAACCACATCCGTACGGCGTGCATCCAACCACCCAATTCCATATCCAACTCCCCTTTCACTGGCAGACAGCAAGGCAGACCCGGTGGAGACGTCCACTTTACTCATTCTCCTAACGGGACACAACAGACTCCATCGCTCTAACGggaATAGAGACTGTACAGGACTGTTGAGGACTGTTGAGGACTGTACAGTGCAGACCACCAGCACTACCAGCGGCAGCACCATGGCAACCAAGAGACCAGGGGAGAGGACCTCTCCGGCAGCCGGACCCACAGACACCAGGCAGTCTGGAGCAGAGATACAGGAGACACTGgtATACATGCAGTGCTGTGGGCAGGAAGCCCCTAACATGACAGAGAGCAACGGCCATAGGAACATTATGAATAGGCACCATCAGGTACCGGTCTTCGTGCCCCGGGGGAGGACTGAGGCGGGCTGGACCCACCCTGCGGCTCCTCAGCAGACTACAACTCCCACAGTGCCCTCCTGCCCTGTGTCTGCCCCAGACAGTTTCCGGAGCCCAGGGTCGGTGGAGATGGATGAGATCATGGCAGCCATGGTTCTGACCAGTATGTCCTGCAGCCCTGTGGTCCAGAGCTCTCCTCAGGGTCAGAATGACCCTGTACCAGGTTCATCATCAGGGGGCGGAGACATGGAGTGTGGGGGCGGAGACATGGAGTGTGGGGGTGGGGATCTGTCTGACAGCGGCAGCAGTGGCTACTGGAGCTGGGACCACGACAACGTTAgtccctccctgtccctgtccgtcATCGAGATGGACAGCAGCCCCGACGAAGGACTGCACACGGAGCTGGAGCAGGGTGTGGAGCTAAATGTAGCCAAGAGGTCAAagAGTTCTTTCAGAGGAGCGTACAGGTGTCTGTGGCCCAGCTGTGGCAAGGTGCTCACGTCTTCGGTTGGTATGAAGAGACATGTCCGTGTCATGCACCTGGGcggATCGGAGCAGTCCCACAGAGAGGAGGATTTCTACTACACTAAGTTCTCCTGCAAAGCTCCACCAGCCCTCGTCCCGGCCTTGTCCTCTCACGTCCCATGGGCATCCTGTGGCTCCCCTCCAGACCCTGGTCCTGGTCCAGGTTCCTGTCTCCAGATCCCCTCCTCTACCTCGTCCTCACCCTCAGGGTCAGGCAGCTCCAGGCCCAGCTCAGGCCCAGGATCAACCCCAGGGTCAGCTCCAGACCAGCCCagccctctcagccagtctgccCCCAGTTCCTTTTGGCAGACAGACCACCCGTATCAGGCCTGCACTCCCCTCCAGGTGACGGTGTCCTGTCACAACTCCGCCCCCTGTTGTTggacccctccccctctcaccgtCTCTAACCAGCACAATCACCACAACTCTCAGGTGGTGAGGGGTCGCTGCAGGTCTGTGAGTGTGGGAGAACAGTGGCTTCAACAGAACAGCGCCACCAACAGGCTAACCACCATGAGAGCAGCCTCTCCATCACGCTCTCAATGCTCCTTCAGGAAGGGACGAGGGGAGGCCAAAACGTGTCTTGTGTTTCATCCCTGTAGGAAGGGACGAGGGGAGGCCAAAACGTGTCTTGTGTTTCATCCCTGTAGGAAGGGACGAGGGGAGGCCGAAACGTTTCTTGTGTTTCATCCCTGTAGGAAGGGACGAGGGGAGGCCGAAACGTTTCTTGTGTTTCATCCCTGTAGGAAGGGATGAGGGGAGGCTGAAACGTTTCTTGTGTTTCATCCCTGTAGGAAGGGACGAGGGGAGGCCAAAACGTGTCTTGTGTTTCATCCCTGTAGGAAGGGACGAGGGGAGGCCAAAACGTGTCTTGTGTTTCATCCCTGTAGGAAGGGACGAGGGGAGGCCGAAACGTTTCTTGTGTTTCATCCCTGTAGGAAGGGACGAGGGGAGGCCGAAACGTGTCTTGTGTTTCATCCCTGTAGGAAGGGACGAGGGGAGGCTGAAACGTGTCTTGTGTATCATCCCTGTAGGAAGGGACGAGGGGAGGCCAAAACGTGTCTTGTGTTTCATCCCTGTAGGAAGGGACGAGGGGAGGCTGAAACGTGTCTTGTGTATCATCCCTGTAGGAAGGGACGAGGGGAGGCCAAAACGTGTCTTGTGTTTCATCCCTGTAGGAAGGGACGAGGGGAGGCCAAAACGTGTCTTGTGTTTCATCCCTGTAGGAAGGGACGAGGGGAGGCTGAAACGTGTCTTGTGTTTGATCCCTGTAGGAAGGGACGAGGGGAGGCTAAGAAGTGTCGTAAGGTGTACGGAGTGGAGCACAAGGAGCAGTGGTGCACGGCCTGCCGCTGGAAGAAAGCCTGCCAGCGCTTCACAGACTAAACGAGGGCGCGAACGACGGATGATGGAAAAAAGAGAGACTTGGGAGGAAAAAAAGAGAGGTCACGATCACAACCAGGGCCTGTTAGCCATCAAGAACAACAAATTCCTTTTTTTTCTACCttgtttttttttcccctcaagGAATAAAGTgatttgtgtattttttttaaaatgtaaacgTTGACCTGAGCagtgggtcagtgtgtgtgatgtTAGTAGCTAGTAGTTGATGTTATGACGTGGTAGGCCTACAATGTTCGTAACCCTGGGTAACAATCGGCTCAAAAGTCTGTGCCATGAGATATTTCTAAGGACAAACTTTAGACCGTCCTGGCGGGCTAGTGTGGCACATTTTCTACTAGCCCGATCTGAAAAGTACTAGCCCGATCTGAAAAGTACTAGCCGGATCTGAAAAGTACTAGCCCGATTTGAAAAGTACTAGCCCGATTTGAAAAGTACTAGCCTGATCTGAAAAGTACTAGCCCGATCTGAAAAGTACTAGCCTGATCTGAAAAGTACTAGCCCGATCTGAAAAGTACTAGCCCGATCTGAAAAGTACTAGCCCGATTTGAAAAGTACTAGCCCGATCTGAAAAGTACTAGCCCGATCTGAAAAGTACTAGCCCGATCTGGCGGGCTGGTTTAGTTTCCATCCCGGGTTGAGCAAGGCGCTtcatcctctcctcacctctcactGAGAACacgtctctcctcacctcccacTGAGAAcatgtctctcctcacctctcatgtctctcctcacctctcactGAGAACATGTCTCTCCTCACCTTCCACAGTATTGTAGCTCTCTTCTTCTTTAATCTCCTCCTCCAACACGTCATTCTTCCCCGTGGCCTCCAACACGTCATTCTTCCCCGTGGCCTCCAACACGTCATTCTTCCCCGTGGTGTCTATAGAAGCTATGGAACACCTATACCTCTATGTGATGTGCTATCTATGAGATCTTTTGgactattttgtatttttgtgtttttttattgttATATAAAGAGTTTAATGTCATGTTTTGGCACATtttatttaaacatgtattttacaAGGATAATGATGAATAAGCTACATGTGGTTTGACTCGTTGTGGTTTGAATTGAGTCAGTTTCTTCCATACAGTATTTTACTCTACCCCGTCTTGGTGAACAGTGTAATGGTCTGTATAAGACAGTGTTATGGTCCTGTCTGTATAAGACAGTGTTATGGTCCTGTCTGTATAGGACAGTGTTATGGTCCTGTCTGTATAAGACAGTGTTATGGTCCTGTCTGTATAAGACAGTGTTATGGTCTGTATAAGACAGTGTTATGGTCCTGTCTGTATAAGACAGTGTTATGGTCCTGTCTGTATAAGACAGTGTTATGGTCCTGACTGTATAAGACAGTGTTATGGTCCTGTCTGTATAAGACAGTGTTATGGTCCTGTCTGTATAAGACAGTGTTATGGTCCTGTCTGTATAAGACAGTGTTATGGTCCTGTTTGTATAAGACAGTGTTATGGTCCTGACTGGATCGAGGTATTGAACCACTCCCAAGGGATCAGGCCACGTTAGACTGCATTTTTACAAATATCCTTCTAATGACAGAAGAAACATGTCTAAAGTTACTAAAAACACAGTCAAATAAagtaaataataaatacatttttttaaacagagaA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU760266 lncRNA downstream 3170 5531329 ~ 5532586 (-) True G667566
TU760274 lncRNA downstream 7879 5527602 ~ 5527877 (-) True G667574
TU760263 lncRNA downstream 17959 5517554 ~ 5517797 (-) True G667564
TU760260 lncRNA downstream 20619 5514919 ~ 5515137 (-) True G667561
TU760243 lncRNA downstream 46047 5488669 ~ 5489709 (-) True G667547
TU760277 lncRNA upstream 10924 5562473 ~ 5564029 (-) False G667577
TU760278 lncRNA upstream 10924 5562473 ~ 5564827 (-) False G667577
TU760279 lncRNA upstream 11348 5562897 ~ 5564029 (-) True G667577
TU760283 lncRNA upstream 22329 5573878 ~ 5574450 (-) True G667580
TU760305 lncRNA upstream 33521 5585070 ~ 5585549 (-) True si:dkey-229d11.5
XM_036984611.1 mRNA downstream 85416 5364219 ~ 5450340 (-) False LOC110529167
XM_036984612.1 mRNA downstream 85416 5364219 ~ 5450340 (-) True LOC110529167
XM_036984609.1 mRNA downstream 173074 5344512 ~ 5362682 (-) False LOC110529166
XM_036984610.1 mRNA downstream 173074 5344512 ~ 5362682 (-) True LOC110529166
XM_036984607.1 mRNA downstream 331334 5187359 ~ 5204422 (-) True LOC110529164
XM_036986816.1 mRNA upstream 32296 5583845 ~ 5586635 (-) False si:dkey-229d11.5
XM_036984624.1 mRNA upstream 97947 5649496 ~ 5669949 (-) False LOC110529170
XM_036984625.1 mRNA upstream 97947 5649496 ~ 5739571 (-) True LOC110529170
XM_036986817.1 mRNA upstream 158596 5710145 ~ 5711121 (-) True LOC118965593
XM_021611414.2 mRNA upstream 387393 5938942 ~ 6044926 (-) False LOC110529295
TU759716 other downstream 1045536 4488806 ~ 4490220 (-) True G667122
TU758186 other downstream 1865609 3668232 ~ 3670147 (-) True G665927
TU758017 other downstream 2014133 3520790 ~ 3521623 (-) True G665797
TU757924 other downstream 2117468 3417113 ~ 3418288 (-) True G665718
TU757859 other downstream 2194796 3340056 ~ 3340960 (-) True G665655
TU761008 other upstream 655009 6206558 ~ 6284021 (-) True G668192
TU761057 other upstream 728647 6280196 ~ 6281640 (-) True G668238
TU761993 other upstream 1234983 6786532 ~ 6794187 (-) True wdr21
TU762099 other upstream 1438301 6989850 ~ 6991612 (-) False G669087
TU762102 other upstream 1438301 6989850 ~ 6991612 (-) False G669087

Expression Profile