RNA id: TU760278


Basic Information

Item Value
RNA id TU760278
length 469
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id G667577
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 5562473 ~ 5564827 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggtctatggttactaaggatacaggtctatggttacTAAGGATACAGGTATATGGTTAGGAAGGATACATGTCTATGGTTAGGaaggatacaggtctatggttactaaggatacagGTCTATGGTTAGGaaggatacagGTATATGGTTAGGaaggatacaggtctatggttactaaggatacaggtctatggttactaaggatacaggtctatggttactaaggatacaggtctatggttactaaggatacaggtctatggttactaaggatacaggtctatggttacTAAGAATACAGGTATATGGTTACTAAGGATACAGGTATATGGTTAGGAAGGATACATGTCTATGGTTAGGaaggatacaggtctatggttactaaggatacaggtctatggttactaaggatacaggtctatggttaataaggatacaggtctatggttactaaggatacaggtctatgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU760268 lncRNA downstream 21621 5535777 ~ 5540852 (-) False znf395b
TU760266 lncRNA downstream 29887 5531329 ~ 5532586 (-) True G667566
TU760274 lncRNA downstream 34596 5527602 ~ 5527877 (-) True G667574
TU760263 lncRNA downstream 44676 5517554 ~ 5517797 (-) True G667564
TU760260 lncRNA downstream 47336 5514919 ~ 5515137 (-) True G667561
TU760283 lncRNA upstream 9051 5573878 ~ 5574450 (-) True G667580
TU760305 lncRNA upstream 20243 5585070 ~ 5585549 (-) True si:dkey-229d11.5
TU760296 lncRNA upstream 35698 5600525 ~ 5629477 (-) True G667587
TU760568 lncRNA upstream 79039 5643866 ~ 5644318 (-) True G667822
TU760595 lncRNA upstream 87803 5652630 ~ 5653181 (-) True G667835
XM_036984619.1 mRNA downstream 10923 5535756 ~ 5551550 (-) False znf395b
XM_036984617.1 mRNA downstream 10924 5535756 ~ 5551549 (-) False znf395b
XM_036984616.1 mRNA downstream 10929 5535756 ~ 5551544 (-) False znf395b
XM_036984618.1 mRNA downstream 10937 5535756 ~ 5551536 (-) False znf395b
XM_036984612.1 mRNA downstream 112133 5364219 ~ 5450340 (-) True LOC110529167
XM_036986816.1 mRNA upstream 19018 5583845 ~ 5586635 (-) False si:dkey-229d11.5
XM_036984624.1 mRNA upstream 84669 5649496 ~ 5669949 (-) False LOC110529170
XM_036984625.1 mRNA upstream 84669 5649496 ~ 5739571 (-) True LOC110529170
XM_036986817.1 mRNA upstream 145318 5710145 ~ 5711121 (-) True LOC118965593
XM_021611414.2 mRNA upstream 374115 5938942 ~ 6044926 (-) False LOC110529295
TU760267 other downstream 11228 5548803 ~ 5551245 (-) True znf395b
TU759716 other downstream 1072253 4488806 ~ 4490220 (-) True G667122
TU758186 other downstream 1892326 3668232 ~ 3670147 (-) True G665927
TU758017 other downstream 2040850 3520790 ~ 3521623 (-) True G665797
TU757924 other downstream 2144185 3417113 ~ 3418288 (-) True G665718
TU761008 other upstream 641731 6206558 ~ 6284021 (-) True G668192
TU761057 other upstream 715369 6280196 ~ 6281640 (-) True G668238
TU761993 other upstream 1221705 6786532 ~ 6794187 (-) True wdr21
TU762099 other upstream 1425023 6989850 ~ 6991612 (-) False G669087
TU762102 other upstream 1425023 6989850 ~ 6991612 (-) False G669087

Expression Profile