RNA id: TU760587


Basic Information

Item Value
RNA id TU760587
length 2199
lncRNA type antisense_over
GC content 0.39
exon number 2
gene id G667829
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 5756769 ~ 5789165 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAAATatacatacaaatatttacaatcTATTGAGGTTGTACATCAaggcaaacaacaacaacaacaacaaacacataTTACAAAGTAAATTGCATTTCCAAACGGGCTGGTTCAAGGCTTTGGGAAATTCTGGCAACATATGGCTAAAATACAATGTGCATCTGAAAAGGCACCCATTTTATTTATAGTAACCTATTCtaactatagtacactactttggaccaaataacataatatatatgttattattattttatttttttgtgcacttggtccaaagtagtgtactatagttaGAATAGGATATCATTTTGGACAGAGCCGTAAATGTCATTTCTGATGATAATGTTCCTCGATAGTGTCAACATATGAACATTCCACTAGAGGGtcttcctgtactgtactgtatcgaCTGAATGCAAATACTTTGAGAAAGGAAAGGCATGTTAATTGGCCTAGTGAGGAAGGACACAGGAAACATGGGCTTCgtcaccaaatggcaccctattccctacttagtacactacttttgaccaggcacATGGTTTCTGGgcggagggatagagggatgtgtACCCTCCTCATCAGTGTTATCTGTGGCTCTGAATATGgttgacagagaaacagagaggacacacgtTTTACAGCTGAACCCTCGACCTTCACCAAGTTTATATGACCCTTATGGCTACATTAGAGAGTCTGAGAAGAAATCTTTCTCTTGAGTCCTTGGATATATTCATGGAATGTTCctcaaatgttatttttctgtTTGAGTTCTAGAACAAATTAATGGAATGTTCCTCAAATGTTCTTTTTCTGTTTGAGTTCTACAACAAATTAATGGAATTTTCctcaaatgttatttttctgtTTGAGTTCTAGAACAAATTAATGGAATTTTcctcaaatgttatttttttgtttgagTTCTAGAACAAATTAATGGAATTttcctcaaatgttttttttttgtttgagtTCTAGAACAAATTAATGGAATTTTCCTCAAAATGTTCTTTTTCTTTCTGAGTTCTAGAACAAAAGCAGAATGAACACCAGCGTAACTTTGTTTTGTTGCTGGTCTGCTCCCCACACCCTGAAATTGCTTTGTTACTTGAGGAAAATGTGCTTATTGTTGCATTTCTCTTCAATCTGTTTGCACCCGTAAAATAGATAGTGTGAGTAATTTAGACTGAGTATACAAAATACGTCAGAACCACTTTGACATAGAATGTGTGCAATAAACAGATTCTAGAACATAAAACCATCCCAGTCCTATTTGTGGGCGTATCAGTCTACATGGAACAAAAATACTTTGCATTAGTTTGTGATCCTTTCAAAAATATACTATGGTTTGCTTTGACGTTAAAGAATATGTGTGAGACCTCAAGGCCAGCTTATGACAATAAGTGAAACATTAAAGTTGATACTGTTGAACAAACTATTAAAATATTATAACATATAAAACCCTGCAGTGGCATCTCTTTCGAAAAAGGAAATGAATGTCCAAGAATTGGATGTATAATCCCACTGGGAACACAGcggttgtttccacgtcattccaatgtaattacattgaaccaacgtggaacagACTTTTGAAtggacatctgtgcccagtgggattccTGTTTACTCCAAGCTgtgaaacacacaaaaaaactaatcATCAGATGGATTGATAAAAGTCCATTTTTCTTTCTTCTATATCATTCATGAAGGTATATCTCTGGCTGGTTTGATTCATTCATGAAGGTATATCTCTTGCTGGTTTGATTCAATTGTTGATCTCAAGACACTGTTGTTTGTCTCTGTAAGCACCAATTAGACTCATCCCTCTCCTTCAGATCAGCCAATCAGAAGGCCTCACACTGACAGTCTAGCTCAATCAGACGGTCTCATACAGCAGCATCCCGCTGAAGATGGTGAGGGGTTCTGAGGAGTGGGCTAGTTTCCCGGTGACCAGGTCGATACAGACGGTATCTCCCACCTTCATAGGGAGGATGATGTTGAAGACAGCCAGGGCTCCGGGCGTGTGTCTGGCCTCCGCCATGGGTTTCTCCAGTCCCTCTGGTTGGTAGCCTGCAGAGTCCCCACGCGCCACTCCGTAGTTAGACTTAGATAGGACAGCCTCAATCTTCACATTCTTATGGCCTGTCAGGGTAGCGCTGAAGAAGTATCTACCACTCACCGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU760637 lncRNA downstream 18659 5767469 ~ 5768210 (-) True G667870
TU760596 lncRNA downstream 89559 5655806 ~ 5697310 (-) True G667836
TU760595 lncRNA downstream 133688 5652630 ~ 5653181 (-) True G667835
TU760568 lncRNA downstream 142551 5643866 ~ 5644318 (-) True G667822
TU760296 lncRNA downstream 157392 5600525 ~ 5629477 (-) True G667587
TU760642 lncRNA upstream 7487 5796603 ~ 5797155 (-) True G667874
TU760659 lncRNA upstream 50656 5839772 ~ 5840216 (-) True G667890
TU760705 lncRNA upstream 125242 5914358 ~ 5915859 (-) True G667925
TU760708 lncRNA upstream 130511 5919627 ~ 5920000 (-) True G667927
TU760693 lncRNA upstream 150164 5939280 ~ 5941606 (-) False LOC110529295
XM_036984625.1 mRNA downstream 47298 5649496 ~ 5739571 (-) True LOC110529170
XM_036986817.1 mRNA downstream 75748 5710145 ~ 5711121 (-) True LOC118965593
XM_036984624.1 mRNA downstream 116920 5649496 ~ 5669949 (-) False LOC110529170
XM_036986816.1 mRNA downstream 200234 5583845 ~ 5586635 (-) False si:dkey-229d11.5
XM_036984619.1 mRNA downstream 235319 5535756 ~ 5551550 (-) False znf395b
XM_021611414.2 mRNA upstream 149826 5938942 ~ 6044926 (-) False LOC110529295
XM_021611408.2 mRNA upstream 906866 6695982 ~ 6717482 (-) False LOC110529288
XM_021611407.2 mRNA upstream 906866 6695982 ~ 6717783 (-) True LOC110529288
LOC118965487 mRNA upstream 970284 6759400 ~ 6761544 (-) False LOC118965487
XM_036984634.1 mRNA upstream 997261 6786377 ~ 6800030 (-) False wdr21
TU760267 other downstream 235624 5548803 ~ 5551245 (-) True znf395b
TU759716 other downstream 1296649 4488806 ~ 4490220 (-) True G667122
TU758186 other downstream 2116722 3668232 ~ 3670147 (-) True G665927
TU758017 other downstream 2265246 3520790 ~ 3521623 (-) True G665797
TU757924 other downstream 2368581 3417113 ~ 3418288 (-) True G665718
TU761008 other upstream 417442 6206558 ~ 6284021 (-) True G668192
TU761057 other upstream 491080 6280196 ~ 6281640 (-) True G668238
TU761993 other upstream 997416 6786532 ~ 6794187 (-) True wdr21
TU762099 other upstream 1200734 6989850 ~ 6991612 (-) False G669087
TU762102 other upstream 1200734 6989850 ~ 6991612 (-) False G669087

Expression Profile