RNA id: TU760693


Basic Information

Item Value
RNA id TU760693
length 2021
lncRNA type sense_over
GC content 0.41
exon number 2
gene id LOC110529295
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 5938942 ~ 6044926 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTAAACTCAACTCTCTGGTCTCTGGGACCAGTGTAAACTCAACTCTCTGGTCTCTGGGACCAGTGTAAACTCAACTCTCTGGTCTCTGAGTTCTAACTCAGTGGTTGTGatacagtaaagtacaggtaTTCAATAAATGCCTTTCCAGGACCCAGGCAGAGTGCGAACAGTGAAGCATTGAATCtcaacactgtaaaaaaaaatacagcctCCTCCCTCCCATATGCCATAGGAGATATTAAAaagggaaaaaaaactatttcagcATCACTAATAAAGACTGAACCGTGTGGATTTGGCTCCTGAGGGAAAAAGGCTGGGAAGTGTTTTGCTATAATGGCTCCCATTAGATCTCAGCAGCAGTAGCCAGAAGGCTATACGCTCGGAAAGTGGAGACATCATATAACGTTCAAAAGTCAACATTGTGGAGACAGCTTGACGTTTCGGAGACACCGTCGCGCTTGCTAGCATTGGAGATTTGAGCTGGCTAATTAACGGTAAATACTGTAAGTGAATCGTTTCCCCCTCTCAGTCAAACTAAAATTGTTTACCGTTAGTTAGCAATCACTATTTTGCTAGCTACGGTAGTGCTCCAGTGTCAACAATAACATTGTTGTCTCCAGTTGTATTTACATGTCTACATTGTGACCCGCAGACATGCGAATCCACTTCTGTCTGCAGTCGGCAGATAGGTTGTCTGAAAAGGTCTTTTCCAACTGCTATGGACATTGTCTCGCCAACAGGCTAATTACGTCTGACCATTATCAATAGACACACAGAGGGACTTCTTCTTCATTAGACTAGACACTGaggccatgcacacacacacacacatcctctggtAACAGCCCACCATGTTTTAATTGATTTCCTGGAAACTTTTGTTGTTCTGAGCCGTTAACACTCGCCTCATTCACTACCTAAATGAACTGAACTCACTATTTTACACCTAGTTGCTCCTACAATtacatgacctttgacctttcAACCTCCCCCACCCCTTTTACAGTGCGTTCCCATGGCAACTGTTTGGCCCCAACTGTTGCAGTGCCATTGATTTTTACTGCAGTGTGGCtaaaatcagggtcacacagagtgtttcttggtttgtctttaaacaaatctactttgaaactaaagtaaaacacctcacacacatggtcatGGTCTTAAAAAAAGATGACGCCTGAACCATGTCAgatatatagagttgaaatgtattacattttgagtttgcatctcaATAATACACTTCATACAATACACATCCCAGAAGACTGAAATTTTGCAAAACTGTTCGATGTGGAAAAAACGTATTTTCGTCGAGGTTTCTTTAAATAACGTTAATTATTTACTAATTTATGATAAATATTCATAACATTCcatccatgaggccactaggtcatttgactgcaggaaagggatcTATGATagatctgtctctggtctgtggaATCTATGAAGGGATCTATGATagatctgtctctggtctgtggaATCTATGAAGGGATCTATGATagatctgtctctggtctgtggaATCCGTTAAGATCACATTATAAAAGATGATGTTATGATGCCCAACACCGTCATTTGCAGGGGATACTTGGCGCTGCCTCTGACCGGGTGGATGGGAAATTGGAGGACGACTTCCTGCAATGAGATCGAGGTCAGGTCATTTGACCTCACTCATCCAGCCACTCGGGTCATGTGACAGTGTTGATGCCCATTCTGTGTTCTACTACTGAGAGATGGTATAGgtagttttgtttgtttttttacagtgtccatattaggacattcAACTCCACATGAGACTGAagatgtcctaatatggacaccatattattgtttgtttattttatttttttgaggaAAACTCTTCACTGCTGATACATCTGATGATAAATGATTTGTGTTTTGTATGACGTGTTTTATGTGGCTCTTTAGTGAACCAGGTATTGTCCAATTATGTCAAATACGGTTTACCATTAATGTTGATGCTGTTGTTTCTCCCCCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU760708 lncRNA downstream 19280 5919627 ~ 5920000 (-) True G667927
TU760705 lncRNA downstream 23421 5914358 ~ 5915859 (-) True G667925
TU760659 lncRNA downstream 99064 5839772 ~ 5840216 (-) True G667890
TU760642 lncRNA downstream 142125 5796603 ~ 5797155 (-) True G667874
TU760588 lncRNA downstream 150115 5786869 ~ 5789165 (-) True G667829
TU760724 lncRNA upstream 4427 5946033 ~ 5947242 (-) True G667942
TU760756 lncRNA upstream 55972 5997578 ~ 5998007 (-) True G667971
TU760759 lncRNA upstream 57678 5999284 ~ 6000149 (-) True G667973
TU760760 lncRNA upstream 58564 6000170 ~ 6001061 (-) True G667974
TU760786 lncRNA upstream 99336 6040942 ~ 6041515 (-) False G668000
XM_036984625.1 mRNA downstream 199709 5649496 ~ 5739571 (-) True LOC110529170
XM_036986817.1 mRNA downstream 228159 5710145 ~ 5711121 (-) True LOC118965593
XM_036984624.1 mRNA downstream 269331 5649496 ~ 5669949 (-) False LOC110529170
XM_036986816.1 mRNA downstream 352645 5583845 ~ 5586635 (-) False si:dkey-229d11.5
XM_036984619.1 mRNA downstream 387730 5535756 ~ 5551550 (-) False znf395b
XM_021611408.2 mRNA upstream 754376 6695982 ~ 6717482 (-) False LOC110529288
XM_021611407.2 mRNA upstream 754376 6695982 ~ 6717783 (-) True LOC110529288
LOC118965487 mRNA upstream 817794 6759400 ~ 6761544 (-) False LOC118965487
XM_036984634.1 mRNA upstream 844771 6786377 ~ 6800030 (-) False wdr21
XM_036984632.1 mRNA upstream 844771 6786377 ~ 6801226 (-) False wdr21
TU760267 other downstream 388035 5548803 ~ 5551245 (-) True znf395b
TU759716 other downstream 1449060 4488806 ~ 4490220 (-) True G667122
TU758186 other downstream 2269133 3668232 ~ 3670147 (-) True G665927
TU758017 other downstream 2417657 3520790 ~ 3521623 (-) True G665797
TU757924 other downstream 2520992 3417113 ~ 3418288 (-) True G665718
TU761008 other upstream 264952 6206558 ~ 6284021 (-) True G668192
TU761057 other upstream 338590 6280196 ~ 6281640 (-) True G668238
TU761993 other upstream 844926 6786532 ~ 6794187 (-) True wdr21
TU762099 other upstream 1048244 6989850 ~ 6991612 (-) False G669087
TU762102 other upstream 1048244 6989850 ~ 6991612 (-) False G669087

Expression Profile