RNA id: XM_021612175.2


Basic Information

Item Value
RNA id XM_021612175.2
length 1934
RNA type mRNA
GC content 0.49
exon number 3
gene id LOC110529714
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 26599030 ~ 26602934 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCAAGACTGGCTGCCCTGCAACCACACACCTCACCTTTAAAGGTTACCTGGCCCAGTAAGAACCAACGACGTCACGCGTCCCGTCCTCAGGACAGGTCGCGCGTCACCTTGACAAGGGTTGTATCATGGAATGAGGAAAAGAAGATCACACCATCTGGACAGAATACTTTAAGATATTAACTCTCATCGATAACAACTATCAGTAATGTGAAAATTAGACATAATAAATTGACAGTCACAGAATTTGAAAGAAACAGTTGTAAGTCAGGTCCAGTTTCAGAATGTACCGCCAGTGCGCGAGTCTGGTGGAACGACACCGGTCAGAGCTGAGTTTCGCATTGCTGTTGTCAGGCTATGCGCTCTACCTGATTCTTGGCGCATGGGTCTTCTCCGCGGTTGAGCTTCCATATGAGCAACGGCTGCGCGAACAGCTGGAGACCGCCCGGCAAAAGTTTCTCTGGGACAACGCGTGCGTGTCTGACGAAAGGCTCGAGGAGCTTCTGACCCGCGCACTGCATGCCAATAACTACGGCGTATCGGTGCTCGGTAACGCTAGCGAAAACAACTGGGACTtcatctcctctctgttctttacCAGCACAGTTCTAACCACCACGGGCTATGGTCACACTGTACCACTGTCAGATGGAGGAAAGGCATTCTGTGTGTTCTACTCTCTCCTCGGAATCCCCgtcactctcctcttcctctccgccCTGGTACAAAGAATTATGGTCCTGGTGACACGCCGGCCTGTGGCGTACCTTCACCTGCGATGGGGAGTGTCCAAACCAAAGTTTGCCGCTGTCCATGCGGCATGTCTATCCGTTGTTGCAGcactgctcctcttcctcctaccAGCGGTAGTGTTCTGCAGGCTGGAGCCTCTATGGAGCTACCTGGAGTCCCTCTACTTCTGCTTCATCTCGCTTACTACAATTGGCCTAGGAGACTATGTACCTGGAGAGACTCACAATACCGTTCCCAACTCTCACCGCACGCTATATAAGCTGGCTATTACACTGTACCTGTTGCTTGGCTTGGTGTGTctgttggtggtggtggagacGTGTTGTGAGCTGCCACAGCTGAAGAGCTTCAGGAGGATATTCTACAGAGAAAATAAAGCTCCAgagtcagagaccagagaccaggagGAGTTTAGCAGCACAGAACATGATCAAATGACTGACCACCTAACTGATCAGCTGACCATCTCCTCAGTGTCCGCCCAGGCCGCCTCCCTCCGCCAGGACAACACAACCTGGCAATAGCATAAAATAGATACTTCACTGTGTATTGATGAGAatggaaatgtgtcttctgcctCTTCTGCCTTATGCCCCCCCATTGTCAGTCCTGCAATTCCAGAGGTCACCAACAGATATTTTTGCTTAACCCTCAACTGGTAATGAAAAACCTGCAAAAGTattttaaaaatgaaaaatatatataaaaacacgtCACAATTGCAAGAAAGATGTACAATATTTACAGAGCTCTATGCCAAGGCTTCCTCACAGGTGAAAAGTGATTGCACATTTTGAAACCATGCAGCCTCCCGGTTGAGGGTTGCGGTGTGAGCCGTGTACCCTGTTCAAAGCGGCTGGCGAAGTCTGCTCAAAACAAATTGTCGTATGTAAAGCACGTGGAGAAGGGGGAGACCAAGGTTGGTTGTCACACGGATTGGTTGTCACAGTGCTTATAGAGAGCAATGGTAATGCCGTTTTTTGTAGACACCAACTCCGCCAAGGCTCGTTGGCCAAGCCTATCGGAAATTCATtcggcctcagaaattgcagcccaaataaatgcttcacagagttcaagtaaagacacatctcaacatcaactgtcccgaggagactgaatcaggctttcatggtaaaattgctgcaaagaaaccactactgaaggacaccaataataagaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU786475 lncRNA downstream 168187 26428702 ~ 26430843 (-) False cenpw
TU786477 lncRNA downstream 168187 26428795 ~ 26430843 (-) False cenpw
TU786476 lncRNA downstream 168187 26428864 ~ 26430843 (-) False cenpw
TU786532 lncRNA downstream 213304 26384583 ~ 26385726 (-) True G690801
TU786506 lncRNA downstream 237715 26361027 ~ 26361315 (-) True G690783
TU786758 lncRNA upstream 112283 26715217 ~ 26715507 (-) True G691008
TU786760 lncRNA upstream 116710 26719644 ~ 26719843 (-) True G691010
TU786790 lncRNA upstream 155206 26758140 ~ 26766768 (-) True G691038
TU786806 lncRNA upstream 191475 26794409 ~ 26794617 (-) True G691054
TU786808 lncRNA upstream 191903 26794837 ~ 26795095 (-) True G691056
XM_036985193.1 mRNA downstream 2292 26591530 ~ 26596738 (-) True LOC110529713
XM_036985194.1 mRNA downstream 2352 26591530 ~ 26596678 (-) False LOC110529713
XM_021612165.2 mRNA downstream 135669 26444117 ~ 26463361 (-) True LOC110529710
XM_021612166.2 mRNA downstream 135765 26444117 ~ 26463265 (-) False LOC110529710
XM_021612163.2 mRNA downstream 135874 26444117 ~ 26463156 (-) False LOC110529710
XR_002474429.2 mRNA upstream 568004 27170938 ~ 27186859 (-) False LOC110529723
XR_002474430.2 mRNA upstream 568004 27170938 ~ 27186859 (-) True LOC110529723
XM_036984518.1 mRNA upstream 641625 27244559 ~ 27284467 (-) False esr2a
XM_036984517.1 mRNA upstream 641625 27244559 ~ 27284491 (-) False esr2a
NM_001124753.1 mRNA upstream 645365 27248299 ~ 27267620 (-) True esr2a
TU786474 other downstream 168187 26429115 ~ 26430843 (-) True cenpw
TU785681 other downstream 607887 25990678 ~ 25991143 (-) True G690073
TU785641 other downstream 633537 25965179 ~ 25965493 (-) True G690033
TU785453 other downstream 793555 25801964 ~ 25805475 (-) False LOC110529694
TU787231 other upstream 261276 26864210 ~ 26868078 (-) True G691447
TU787547 other upstream 712634 27315568 ~ 27315935 (-) True G691747
TU788741 other upstream 1512802 28115736 ~ 28116048 (-) True G692859
TU789000 other upstream 1875883 28478817 ~ 28481898 (-) True si:dkey-85n7.8
TU789291 other upstream 1990407 28593341 ~ 28594431 (-) True G693383

Expression Profile