RNA id: XR_002474430.2


Basic Information

Item Value
RNA id XR_002474430.2
length 877
RNA type mRNA
GC content 0.49
exon number 4
gene id LOC110529723
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 27170938 ~ 27186859 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGACCCTTTACAGGAATAGCTCGCCGCAAGATTAGAATGTGAGTCAGCGCTAAGGCTGACATGGTCCCGAAAAGAGTATATAAGAAGAATGCCTTCATTAAGAGGGCATGATAGATCTACTTGACTTATCACTGACAGGCAGCTCGTGATATTTAAACCTATCATCACCCCAAAAGGTAATATCTGACTTTCATACTCTAGAACAATTGTAACTTGTGATTTCTGGATTTTGTAAAGAGACGAACAGAGACAACTACCCTGTACACTCCCATTGCTTAATATATCCACTCCGTAACTGGAGTAGATACACAGCATCGGTGGTGTTACGAAGGGTCTTGATCTCGACACAGCCTTTTAACAAGATTCAGCGAATCATAGTACAAACTTCTAGTAGGAGGAACAGATACTGAGTGATTGGATAAAACCTCTAGAGAAATTGTGAGTTGAAGAACATACTCTTTGGGAACCAACCAGGTCAGCTAAGGGCCTTGTCCACCTGAGTCTGACTGACAGGTCTCTGCcactccctcagcctctctctcagccccgCAGCCCAGCTGAGCACCCGTCGCAGTCGCTTCTCTCTTTCTGCGCAGATGCGGAACATCTCCTCAGCCTGGTGCACCTGCAAACCGTAGGAGGAGCCAGCTTAAGTTGAGGGCACCCATTCGCTCGGCAAAGAGTGTGCGCTCCTCAGAGCAGCTGACAGAGTTATCCGATGCTGCCACTGACTGCGGTCCGGACTGGCACAGGAAATCCAGGTATTGGATTATGTGTCTGAGCTGATCTGCGTCATGGCAGGCTATGATGGTGGCCTGTCCCTGATCTTCCAGCCTGGCTTCTTTGTCCTTCACCCACGCCTCCAGGCCTGACAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU787309 lncRNA downstream 173105 26995283 ~ 26997833 (-) True G691520
TU787293 lncRNA downstream 218392 26950717 ~ 26952546 (-) True G691505
TU787265 lncRNA downstream 261045 26908013 ~ 26909893 (-) True G691479
TU787259 lncRNA downstream 268252 26902457 ~ 26902686 (-) True G691473
TU787257 lncRNA downstream 271549 26899142 ~ 26899389 (-) True G691471
TU787541 lncRNA upstream 110784 27297643 ~ 27298144 (-) True G691742
TU787549 lncRNA upstream 132554 27319413 ~ 27319655 (-) True G691749
TU787555 lncRNA upstream 141959 27328818 ~ 27329410 (-) True G691755
TU787612 lncRNA upstream 221672 27408531 ~ 27410226 (-) True G691807
TU787631 lncRNA upstream 290921 27477780 ~ 27483669 (-) True G691826
XM_021612175.2 mRNA downstream 568004 26599030 ~ 26602934 (-) True LOC110529714
XM_036985193.1 mRNA downstream 574200 26591530 ~ 26596738 (-) True LOC110529713
XM_036985194.1 mRNA downstream 574260 26591530 ~ 26596678 (-) False LOC110529713
XM_021612165.2 mRNA downstream 707577 26444117 ~ 26463361 (-) True LOC110529710
XM_021612166.2 mRNA downstream 707673 26444117 ~ 26463265 (-) False LOC110529710
XM_036984518.1 mRNA upstream 57700 27244559 ~ 27284467 (-) False esr2a
XM_036984517.1 mRNA upstream 57700 27244559 ~ 27284491 (-) False esr2a
NM_001124753.1 mRNA upstream 61440 27248299 ~ 27267620 (-) True esr2a
XR_002474431.2 mRNA upstream 100256 27287115 ~ 27308032 (-) True LOC110529724
LOC110529221 mRNA upstream 428141 27615000 ~ 27616094 (-) True LOC110529221
TU787231 other downstream 302860 26864210 ~ 26868078 (-) True G691447
TU786474 other downstream 740095 26429115 ~ 26430843 (-) True cenpw
TU785681 other downstream 1179795 25990678 ~ 25991143 (-) True G690073
TU785641 other downstream 1205445 25965179 ~ 25965493 (-) True G690033
TU785454 other downstream 1365463 25802030 ~ 25805475 (-) True LOC110529694
TU787547 other upstream 128709 27315568 ~ 27315935 (-) True G691747
TU788741 other upstream 928877 28115736 ~ 28116048 (-) True G692859
TU789000 other upstream 1291958 28478817 ~ 28481898 (-) True si:dkey-85n7.8
TU789291 other upstream 1406482 28593341 ~ 28594431 (-) True G693383
TU789639 other upstream 1771536 28958395 ~ 28958832 (-) True G693665

Expression Profile