RNA id: TU787631


Basic Information

Item Value
RNA id TU787631
length 5790
lncRNA type antisense_over
GC content 0.40
exon number 2
gene id G691826
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 27477780 ~ 27483669 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTCTTTTATTTACACTTAATGCAGTTCAATGAAACAGTTAGTGCACATGCAAAATataatatttaaatatatatatttgcaccAAGTGCCATAAGTAGGGTTTTTTTAAATTGTGAAATATTTGAAAAAGAACAATTACGAAATCAAGTCAAACATATAAAACATGAAATATTACTCAAACACAGACCACAATGAATTCACTCCAAATAAAGCAGAACAACTCTGATAAGAAACATTGACACTTAACTTTGTCGATATCCTTTCTCAGAGAATAAATCCAAAGAAAACACTAATTCCGTGTAAGACACACAAAAAAATTCACAATTGAACAAATTGCTTTGCAGTATAACCGACAATAAATGCATAAACTAAAATAAATCAGGGGTGTTAAATAGAAACTACAATTTAAAACACCCTTTCTTGAGAACATAAGCAATAACTGATAGTCACAACCTCGTTGCTTGCAATGGATACTGAAAATACTCGTCAAGCATTTGAATtgtcaaataaaatgaaaaataaatgtatttttttgtcttGCTCTCATCTATCACAAAACAATATTCCATGCTCTCAGAAAGGTACCGTTGAAAAAATAAACAGTTGCAATATCAAGACAGAGTACCCAAAAAAGTGGTATCAAACAAGTATGTATTGAAAGGGAGATATAAGATGCATTCTATCCCAAAGAGAACTCCACTGAAATTGACACTTCCGATATTCATGGAACGTTTGATATGTTAGTGCCTTACGGGCATGCCAGCACGCGCgaaatgcagattttttttttttttagttgttttttttcttcacataggCCATCGATGCTGTATGCGCTACAATGATGCAGTGTGACATGCCTACTTGCCACACGGTGATGGAGGTATAATCGTCGCATGATGTTATGGTAGTATCCAGCATTGACATGATTGAGAGACCATCAGTGCTGGCAATGTTAAGAAATTTGGACTCTTCACCAAAAAACTGTTGATGGCTTATAGGTTTCAGTTAAAGGCGCAATCTGTATGTTCTGTCTTTCAATTGTAACTTcgattaatgatatgtacccaacTTGGTACAACTGTCTTACTCCATCATAGCCCCAAATCTACAATTGTATTACTCAATGATGTATCATCTTTGTCGTAAACAATGCATAGCTACAAAATATTTCCTTTAATGATCATGTTGCTCTCACTGACTGTCGCTCCTTGCATCTGTAGGTCAGTCTATGAATTTGAGGGGTTACTTCGAAGCCCCATCCCTCACTTTTCCAAACAAAGTGACTAGGCTGTTAAAATTACAGATTGGGCCAGTGAAAGGGTTTGATACCTTATGACATAAGGCACCAATGTACTGCTATGTAAACTTATACAGAGTATTAGTCCTTAAAACACATGAGTTACAGCTGTACAAATCAAGACCATCCAAAAGGTAGGAGGGTAAGCGCCAACAACAACTTTTGGTGGAGTTCTCAGTTAAGATTTTGTCTTACCAAAATCTAACTCATCTGGATTTGAATGAAGGCAGACATCAAATAAAATATTGTCTCATAGGAACAAAGGCAGAGGGGACAGTGTGTTCAAGTCTGGGGTTATAGATTTAAAGCTGGGCTCCTTAATGGTTAAACAGTCATATCCGTTtttgatattacaacaacaagaaGTCACTGCAAACAACGAACACTGTTTTCCCCTCCGGACATCATTGCACGCACGATAGAACATCAGAATATGTACTGCATTTTTTTAAAACCACGTTGGGGCAACGCTCCTCACCTCCACTTAGGCAACAAACAATAACAACGTCCATGGAGGGGATAGTGGCGGACATTGTTTCCCATACAGTGGACTCCATCTTTACGGGAGAAACTGTAATGGTTAAGACAACTAAGTTACGATAGTTCCCTGATAACACTTTTAGCCTTCAACGCCTAACCCAATTTCACCTTAGAAATATTACCATGATTCAATCAGCGGCGCAAAGGAAGGACAAAACTCATACATGTTAAAGCCTTCAAGAGCGAAAGAGTAAAGAAAAATGTGTCTGTTCTGCTATTTGTATAAACTGTAAAACTATCAAGCTGACTAGCATGAGTATAGGGTCATCTTTTTATCCTCTGTAAAATAAATTCTAGCCATTCCAGAAAAAAACATTAAATCCTGATACTTGATTGACGAATGATTCCAAATAGAGGGAGGAAGAATAAATTTGGGGAAACTACATGCTCAGGGGAAAGGGCCCACCTTGGCTATGGAAGACCGCAGTCCAGTCCTTTTGAGGTCAATAGGACTTTGATCAagtcctccccccctcccttttcAATGTTATGGTAAGGCAAACACGCCTGGTTAAAACGATTTAACAGTTTACCTTGCTATCTAACAGCATCATCATTACTGACATACTCCATCTATCCACACACCATTATTATAGAGGTCACTCGTTTCAACGTGATATACCTGGGCTTTACTCTGATTTCCCCAACAAATATTGAGTCCGAACAACGGCTGTGCTACTCACACGGCGAACAGCAGTGGACTAGAGTGTATTAGTTGCATCTCAAATCTGTCAGGAAATGTACAGTGCAGTAAGAGCCTTACAGATTAATTGTTCATTCGAAAGATAAACTGTGGCTTGTAACAGTTGGACCATCAAACCAGCTGGCTGGGCAAAAAAATACGTTATTTTCTGGTGTTAAACTGGTTCTCTGTCTGAGAAGACATCAGATAACGGCAATTCTATGGTGACGGAATTACGCTGAGTCTCAGGTTTTTCACTTTacaatgtatgccaaacaaaaactaTTGATATCAAagtaacaaaccatacaactctatgcacaatgactGCTTTGAATCATTTACACAGTACATAAAAAAAAGGAAAAGCTGCAGATTAAAGTTTGGTAAAAGAATTacagtaaaatctccctcagttttacTCGGTTACCAAAATGTGTACCTGCACAGTTCTTCctctaaatgtgtttttgtaaaatgttcaatgGAAATTGTTTAAAGTAGTCCTCGTGCATAGAGTtgtgttaaactttgaaatcaatggtttttgttaaGTATACATTTGAAAGTAGAAATATGAGTTATCCGTCACCATGGAATTGCCCCTAACCAAATGTAACAACTGGCTTCTTTTACAACTCTGGGAAACCGAGCCAGTCTTCACAAATGTAAACAAAGTTCATGCATAATATTTTGATGTTACATCAACTGCTAAGTTAAGACCTACGTGGCTATGGAATGATGACACCCAGAATGCAATTACAGGCCAATTCAGATAAAGCTTAACCCAATGTGTTCAAAGTTGAACTAGGTAGCTAGCTGTACAAGTCCAAAACAAGTGAACATTTGAAAGTGACACTTGCTGTTTCCTTATTCTACCAACTACTAGACCTTGCTGTTAGGCCTTCGGTTAGGAACCCAAGATACTTATTTAAGCCAATAGTTTATTTTCAATCGTTCTGAAATTGAATTATAATTGCTAACTATTTGGTTTTGATTCTTATATCACCACCACTTCATCGATTTTTaacaacttattgtggaaggggCCATGAATCCACACACTTATATGTTACCAAAAGAAAGGTTTTTCATGAGAAGATGTGTCAATTCACCATTTAGGACTTTAACAGGTCATAATATTTGCAAACTATATAGAAATGTCACTACATCACGACCATACACAATGGTTAAAAAGTATATGGCTAAGATGGTGCAGAATGGTGATCCCTGAATGTTACCTCGTCAAGGGGGGGAAACTGTCTGGACCTGAGATGTTAAGCAAGTGCTTTTGAGATTGATTGTTGTCTTAAGCGCCATCTGTCCCAAATAGGGTTGCAAATCGCAGAACCATTCCCAGAGTTCTTAGGTTTTtcagaaatccTGTATTGCAACCCTAGTTTCAAACCTCCATAGACTTGGATAGCTGCTGTTGTTGATTTCTGTGGAAATGGGGGTATTTTGAAGAGGTCTGGCCAAAACAGGTATAGGGAAAAGAGGGGTCTGTCTAACTGTTGGGCCATGTCTCTCAGATTCACAGGTTAAAAAGCGCAACCATTTTACTTCAAGCCTCACAGACGGTGCTGGTATCAACAAAACTCTTCCGCCCCTGCCGTCAGGTTCAAAATAACAAGGGGGATCACAAAACACACTAAGGGCTCCGGGTGCTGTTCCAGGAAGCTGGGTCAAGTAGCATGCTAAACTTCCTCCTACATGTTACAAGCTAGGTTTTCAGTTTCCTAAAACAAAACTCCCATTGACCCTGCTCAAAAACACTGTCTGAGATATACATAACGCTCTTGATCTCGGCCAATATCGGTGAAGCCTTCCTGCTAACATGCAGGTATAATTGTGAGAGAAATTGTCCACCAGAGGGTTCTCACAATTTCCCAATTAATGATATAGTGGTTACTAGTGTTATCAAAATGCTCAGTATCATGATACTCAGAAGTATCATGATATTACAATACTTTCGAGTATTGTGATACTGAGTATTGTGGTGTTAGTATAGTGACAACATTTGTTACTGTAATAAATCTCCCCAGTGTAGAGGTAGGTCATATTCCCGTGGTAGTTAAAAGAAGCCTCTATCGAACGTACAACTTAATGGGACCTCATAGGAGCACACACTACTGTAGTGACACCCCTGGAATCATTGCAATGCTTACAACTTATCTAATCACCTCTGCTAACTGAAATGTTTGTTTTAAAATCAGACCATGATCAAACTACCAGCTATCAAGTATTGCTTAGAGAAGTGTTTCCCAATCCCGGTCCAGGTGGATCCAAAAGGTGAGCAGATTTTTGTTTTAGCCCAGCAATAACTCACCTGACCATGAAGCCATAATAATTAGTGGAATCAGGTATGCTAGTGCTGGGCTGGGATAAAATCGGCACCGCTCCAAGACTGGGAAACACTGGCTTCGAGGCTGAGTAGATTGTGGAGAAAATAAGCAAGGCGCGCCTGAACCAGCTGCAGTAATCGAACAGACTCAGCAATGGCCCTCGTATGTAATAAGCCCTGGCGCTGACTAAGCAACAACATTTTTGCATTCCTGGAACATGATCCAATCAACGGTAGACAAGCAGCTCCAAACGAGAGCGCTATCATGTAGCCATCTTCGTGAGATTGCACCCTGGACCTCTCAGTGAGGAAAAGGTAATACATTTACAGTGAAAACTAACAACAAAAAGTGCTGCTGGCCACCAGCATATGGCAAGTTTTAGAGGAAAAGTACTAAAGACCACGTAAAAAAGAATGAGACAAACCTCTGAAAAATAACAGTTAGTAACGAGAAAAAAAATGGTCCCCCTGGGGCCAACTTATATGGATACGGGCAAAGGCGAAGGGATTGGGAGTAGATTGAAGTTGTCCCTAACCACTGACAAAGGGTCAGATTTTTTTCTCCATCCCCCTAATTGTATAGATTAGGCCTAGGGGTTAGGGTCATTGATCCCAGATCTGTGGTTAACTGCAACTTCCACCTCAGGCTGAAGGGGGCAGGGAAGGGGACAGGTGTTGTTGGGTGGGTTAAACGTTGGTGGAGATCTTGTACTTGGGCGACATGTTGTTGTGGAACCAGATGAAACTGAAAATGACGCCCATGGTCTTGGGGATGCTCTCATCATAGGCAAAGGTCATGGCCTCGTGGAGGGGCACCTTCACCACCTCGATCAATTCGCCCTCCTGTGGCTCGCCGCCGCCCTCACCCACACAGTTCTCGTCCGACACCTCGGCGTAGAACATGGTCTGCTTGGCACCCGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU787612 lncRNA downstream 67554 27408531 ~ 27410226 (-) True G691807
TU787555 lncRNA downstream 148370 27328818 ~ 27329410 (-) True G691755
TU787549 lncRNA downstream 158125 27319413 ~ 27319655 (-) True G691749
TU787541 lncRNA downstream 179636 27297643 ~ 27298144 (-) True G691742
TU787462 lncRNA downstream 263480 27179184 ~ 27214300 (-) True G691671
TU787886 lncRNA upstream 155906 27639575 ~ 27639774 (-) True G692069
TU787904 lncRNA upstream 166718 27650387 ~ 27650607 (-) True G692087
TU787971 lncRNA upstream 201649 27685318 ~ 27685710 (-) True G692153
TU787987 lncRNA upstream 233510 27717179 ~ 27722203 (-) False G692169
TU787988 lncRNA upstream 233510 27717179 ~ 27722203 (-) True G692169
XR_002474431.2 mRNA downstream 169748 27287115 ~ 27308032 (-) True LOC110529724
XM_036984517.1 mRNA downstream 193289 27244559 ~ 27284491 (-) False esr2a
XM_036984518.1 mRNA downstream 193313 27244559 ~ 27284467 (-) False esr2a
NM_001124753.1 mRNA downstream 210160 27248299 ~ 27267620 (-) True esr2a
XR_002474430.2 mRNA downstream 290921 27170938 ~ 27186859 (-) True LOC110529723
LOC110529221 mRNA upstream 131331 27615000 ~ 27616094 (-) True LOC110529221
XM_036985214.1 mRNA upstream 340481 27824150 ~ 27923855 (-) False brf1b
XM_036985215.1 mRNA upstream 340481 27824150 ~ 27923855 (-) False brf1b
XM_021612195.2 mRNA upstream 340481 27824150 ~ 27951450 (-) True brf1b
XM_021612201.2 mRNA upstream 528128 28011797 ~ 28023916 (-) False LOC110529732
TU787547 other downstream 161845 27315568 ~ 27315935 (-) True G691747
TU787231 other downstream 609702 26864210 ~ 26868078 (-) True G691447
TU786474 other downstream 1046937 26429115 ~ 26430843 (-) True cenpw
TU785681 other downstream 1486637 25990678 ~ 25991143 (-) True G690073
TU785641 other downstream 1512287 25965179 ~ 25965493 (-) True G690033
TU788741 other upstream 632067 28115736 ~ 28116048 (-) True G692859
TU789000 other upstream 995148 28478817 ~ 28481898 (-) True si:dkey-85n7.8
TU789291 other upstream 1109672 28593341 ~ 28594431 (-) True G693383
TU789639 other upstream 1474726 28958395 ~ 28958832 (-) True G693665
TU790962 other upstream 2518094 30001763 ~ 30062168 (-) False G694858

Expression Profile