RNA id: TU787541


Basic Information

Item Value
RNA id TU787541
length 502
lncRNA type intronic
GC content 0.40
exon number 1
gene id G691742
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 27297643 ~ 27298144 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcaactatgacagacaaaatgagaagaaaaaaaatccagaaaatcacattgtagaatttctaatgaatttatttgcaaattatggtggaaaataagtatttgatcacctacaaacaagcaagatttctggctctcatagacctgtaacttacttattctttaagaggctcctctgtcttccaattgttacctgtattaatggcacctgtttgaacttgttatcagtataaaagacacctgtctacaacctcaatcagtcacactccaaactccactatggccaagaccaaagagctgtcaaatgacaccagaaacaaaattgtagacctgcaccaggctgggaagactgaatctgcaataggtaagcagcttggtttgaagaaatcaactgtgggagcaattattaggaaatggaagacatacaagaccactgataatctccctcgatctggggctccacgctagatctcaccccgtggggtcaaaatgatcacaagaacgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU787462 lncRNA downstream 83343 27179184 ~ 27214300 (-) True G691671
TU787309 lncRNA downstream 299810 26995283 ~ 26997833 (-) True G691520
TU787293 lncRNA downstream 345097 26950717 ~ 26952546 (-) True G691505
TU787265 lncRNA downstream 387750 26908013 ~ 26909893 (-) True G691479
TU787259 lncRNA downstream 394957 26902457 ~ 26902686 (-) True G691473
TU787549 lncRNA upstream 21269 27319413 ~ 27319655 (-) True G691749
TU787555 lncRNA upstream 30674 27328818 ~ 27329410 (-) True G691755
TU787612 lncRNA upstream 110387 27408531 ~ 27410226 (-) True G691807
TU787631 lncRNA upstream 179636 27477780 ~ 27483669 (-) True G691826
TU787886 lncRNA upstream 341431 27639575 ~ 27639774 (-) True G692069
XM_036984517.1 mRNA downstream 13152 27244559 ~ 27284491 (-) False esr2a
XM_036984518.1 mRNA downstream 13176 27244559 ~ 27284467 (-) False esr2a
NM_001124753.1 mRNA downstream 30023 27248299 ~ 27267620 (-) True esr2a
XR_002474429.2 mRNA downstream 110784 27170938 ~ 27186859 (-) False LOC110529723
XR_002474430.2 mRNA downstream 110784 27170938 ~ 27186859 (-) True LOC110529723
LOC110529221 mRNA upstream 316856 27615000 ~ 27616094 (-) True LOC110529221
XM_036985214.1 mRNA upstream 526006 27824150 ~ 27923855 (-) False brf1b
XM_036985215.1 mRNA upstream 526006 27824150 ~ 27923855 (-) False brf1b
XM_021612195.2 mRNA upstream 526006 27824150 ~ 27951450 (-) True brf1b
XM_021612201.2 mRNA upstream 713653 28011797 ~ 28023916 (-) False LOC110529732
TU787231 other downstream 429565 26864210 ~ 26868078 (-) True G691447
TU786474 other downstream 866800 26429115 ~ 26430843 (-) True cenpw
TU785681 other downstream 1306500 25990678 ~ 25991143 (-) True G690073
TU785641 other downstream 1332150 25965179 ~ 25965493 (-) True G690033
TU785454 other downstream 1492168 25802030 ~ 25805475 (-) True LOC110529694
TU787547 other upstream 17424 27315568 ~ 27315935 (-) True G691747
TU788741 other upstream 817592 28115736 ~ 28116048 (-) True G692859
TU789000 other upstream 1180673 28478817 ~ 28481898 (-) True si:dkey-85n7.8
TU789291 other upstream 1295197 28593341 ~ 28594431 (-) True G693383
TU789639 other upstream 1660251 28958395 ~ 28958832 (-) True G693665

Expression Profile