RNA id: TCONS_00035372


Basic Information

Item Value
RNA id TCONS_00035372
length 3259
RNA type mRNA
GC content 0.38
exon number 2
gene id XLOC_017926
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 9958506 ~ 9963713 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GATTTCACACGGTTCTCTGTGTTACATTCGCCTCCGAATGAACAGCCATGGGGGAATGGACAATTCTCGAGCGTCTCCTGGAGGCGGCTGTCCAACAGCACTCTACTATGATTGGGAGGATCCTGCTAACTGTTGTGGTGATCTTCCGGATTCTAATTGTGGCGATTGTTGGAGAGACCGTGTACGACGACGAGCAGTCAATGTTTGTGTGTAACACTCTGCAGCCAGGCTGTAACCAAGCTTGCTATGACAAAGCGTTCCCTATATCTCACATCAGATACTGGGTTTTCCAGATCATCATGGTTTGCACACCCAGTCTCTGCTTCATCACATACTCTGTGCATCAGTCGGCCAAACAGAAGGAGCGGAGGTATTCTACCATCTACCTGTCCCTCGACAAAGACCCCGATACGATGAGGCGAGACGACAGCAAAAAGATCAAAAACACCATTGTGAACGGAGTACTTCAAAACACGGAGAACTCCACCAAAGAGTCCGAGCCTGACTGTCTAGAGGTCAAAGAGATCCCCAATTCAGCCATGAGAACTACCAAATCTAAAATGAGAAGACAAGAGGGCATCTCCAGGTTTTACATCATTCAGGTGGTGTTCAGAAACGCACTGGAAATTGGCTTCCTGGTGGGCCAGTATTTCTTGTACGGATTCAACGTGCCCGCCGTGTACGAGTGCGACCGCTATCCTTGCATCAAAGACGTCGAATGCTACGTATCAAGACCTACGGAGAAAACCGTGTTCCTCGTCTTCATGTTTGCAGTCAGTGGGATTTGCGTGGTGCTCAACCTGGCTGAACTCAATCACCTGGGCTGGAGGAAAATTAAAACAGCGGTGAGGGGGGTTCAGGCCAGGAGGAAGTCCATCTATGAGATCAGAAACAAGGACTTACCGCGGATGAGCATGCCGAATTTCGGAAGAACCCAGTCCAGTGACTCTGCCTACGTTTAATGCTTTCTTCGTGTAGATTATTAGAGTGGTGGTCCTCAATTCTGGTTCAGAAAGAGCACAGgttgcacattttggatatgttcACCCCACCTTATGTAGCTTATTCTGCAATACGGAAGTAAGcctttttttgtgattgttttggaACTTCCGATTCATTTGCTATACGGGAAATGACTAGGAACAATAAACAACAGTAAATGATCACAATACTTGCTCTACAAGCAAtgtttaaacaaaatgtttaaaaaaaaaattaataagaaaataGTTTGCAAACAtcaagtttgcaacatcaagtagCATAATAAGCTATTTTCTATGGCTAAAAACAATGGAAGTGAATAGGACTGGAAGTCTCGTGCCTATAAGGTTCTAATGGCTGGGCCCACAtttacagcgctcagcataattaagtacacctcTATTAAGTTTCTTCTATTAAGCACCTCTATTATTATTAAGTACACTTCATtttagaaaatgaatatttgtatccatttctcagtgaacataggcaatgtattttgatgcgttaaaacaaaacagatttattaaacagacatatttattaaaatattttttcagtcaccaaacatattagaAATTGAATGATAAAACAATTCagataaaatattgcaaaaataacttacaacctacaaaatttgtacatttttttgctgctcttgatttttcctccttGATTTTGACCGTTATCGTAGGTTATTGTGATAGATTggctccagatttagcttcagtattgactaatctaatgtatatgcacaaatgtattattgtaaaattttattttgattttattttatattaatttaaaagatggatttgtgaggggtgaacttatatatgctgagcaccgtAAGTGAAAAAAATAAGCTCAATAGAAAACCACAGCGACTTCACATGTGCAACCAACCACATGGAACGTGTGGTTTTGGAACATTTTCATGTGTAAAGAAATGTGTATAACATGATTGGTGTGTTGTACATATGATTTTAATGTGAAACTCTGCCATGAAACTCCCTATCAAGTTATTCCAAGCCTTTATGTCCTTCTTTGGAACACAAAAGCAAATGTTTGCAAAATGTTTTTGTCCATGCAATGGGAACTCTTGTCAAAAACAACATTGGATCTCTCAAAATATCTTGTATTTGTGTTCCATGGAAAGACATTAGTGTAAGCAAATGATGCCAGTGGCATCCAAAATGTGCATTTCTTGAGGACACCACTAGATTAGATTATATTAAGACCAGATACTTTATGAACTGTTCATCTCGCCTGTTTGATGGTGGGGTAGATggattttatttgtcttttatgGACAAACTGAACAAACGGACCAAACAAACGTTTGTTTCCTATCATTTACTGAAGGGCACTGATGCAACTTTTTTTATCGGTCGGAACGGAAAAGCTTACGATGACATTATTTCGATATTTTATTTCTTCGTTCACACGATCAGCTGAACTCGAAATATGTTTTGCACTAAATACGGATTTAATGAAGCCAAAATGAACCCAAACTGTGCTGTGACggtttttacatttcattatctTGTATTTCATTCTGGTTTTAGATTGCACTTAcaggttttagtttttttcacTGCAAGTAGACTGCAGATCTAATATGTTTATCAATACTATATTCATATCTCTCTCTTTCGGCTTAGATAGATTGGCATCTTTAATGATTTGGTTGCCTGTGCTTGCACCACTGACCTTAACATAagttattgttttgttatatatataagCTGATTTGCAGATCAGTAGCCGGTGAACTGGCCTATGCTGCATAACGCTGAACTctctatcttttttatttatttcttagtaTATTGGactgttttattgatttatttatgtttgacaCCAAAGCGCCCATTGCTTTCATTTGTGGGAATCGGATATATTGCTTTTATGTATTCAAGTGCCATATatgtacatagatatatacatattataGAATATTGTAATCCTTATTGTGAGGTATGAATTCTATATGCGTGGACTGCTTAAAAGGATGTTCCATCCCTTTAATGTGAGAATGGAAGagtgaaaaaaatcattcatacATATTTTGCATTCATGAAAAGTATaatattgcatttaaatatatagAAAGCACAATTGATAAGAAACCAGTGATTACGGGGTTGAGATTCACTTCCCCTGGTGCTtcaatttctcaaaaaacatGATGTTACAGTAGCAACTATgtgagaatttaaaaaaaaaaaaatccaacaataaatgacagaattcatGACTGAAA

Function

GO:

id name namespace
GO:0007267 cell-cell signaling biological_process
GO:0007154 cell communication biological_process
GO:0005886 plasma membrane cellular_component
GO:0005921 gap junction cellular_component
GO:0005922 connexin complex cellular_component
GO:0030054 cell junction cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0055077 gap junction hemi-channel activity molecular_function
GO:0005243 gap junction channel activity molecular_function
GO:0005244 voltage-gated ion channel activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030911-1 Enables gap junction hemi-channel activity and voltage-gated ion channel activity. Acts upstream of or within cell-cell signaling. Located in gap junction. Part of connexin complex. Is expressed in several structures, including heart; kidney; liver; nervous system; and neural tube. Orthologous to human GJD2 (gap junction protein delta 2).

Ensembl:

ensembl_id ENSDART00000104234

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00035348 lncRNA downstream 1123412 8794502 ~ 8835094 (-) True XLOC_017914
TCONS_00035342 lncRNA downstream 1637192 8122693 ~ 8321314 (-) False XLOC_017913
TCONS_00036797 lncRNA downstream 2005324 7951782 ~ 7953182 (-) True XLOC_017909
TCONS_00036796 lncRNA downstream 2319854 7612155 ~ 7638652 (-) False XLOC_017907
TCONS_00036795 lncRNA downstream 2747310 7191883 ~ 7211196 (-) True XLOC_017904
TCONS_00036798 lncRNA upstream 113444 10077157 ~ 10078215 (-) True XLOC_017930
TCONS_00035378 lncRNA upstream 150315 10114028 ~ 10117997 (-) True XLOC_017931
TCONS_00035381 lncRNA upstream 384070 10347783 ~ 10399176 (-) False XLOC_017933
TCONS_00035380 lncRNA upstream 384070 10347783 ~ 10422813 (-) True XLOC_017933
TCONS_00036799 lncRNA upstream 1015745 10979458 ~ 10992289 (-) True XLOC_017935
TCONS_00035369 mRNA downstream 177589 9776390 ~ 9780917 (-) False XLOC_017924
TCONS_00035366 mRNA downstream 198082 9752382 ~ 9760424 (-) False XLOC_017923
TCONS_00035365 mRNA downstream 202956 9751743 ~ 9755550 (-) False XLOC_017923
TCONS_00035368 mRNA downstream 202960 9754072 ~ 9755546 (-) True XLOC_017923
TCONS_00035363 mRNA downstream 283629 9643884 ~ 9674877 (-) False XLOC_017922
TCONS_00035373 mRNA upstream 7073 9970786 ~ 9980318 (-) True XLOC_017927
TCONS_00035375 mRNA upstream 94037 10057750 ~ 10065130 (-) True XLOC_017929
TCONS_00035376 mRNA upstream 134877 10098590 ~ 10118818 (-) False XLOC_017931
TCONS_00035377 mRNA upstream 135396 10099109 ~ 10120442 (-) False XLOC_017931
TCONS_00035379 mRNA upstream 323348 10287061 ~ 10288156 (-) True XLOC_017932
TCONS_00035371 other downstream 52122 9906268 ~ 9906384 (-) True XLOC_017925
TCONS_00035370 other downstream 177639 9777179 ~ 9780867 (-) True XLOC_017924
TCONS_00035367 other downstream 198082 9752531 ~ 9760424 (-) False XLOC_017923
TCONS_00035364 other downstream 307444 9644065 ~ 9651062 (-) True XLOC_017922
TCONS_00035349 other downstream 1021502 8936903 ~ 8937004 (-) True XLOC_017915
TCONS_00035374 other upstream 89692 10053405 ~ 10053701 (-) True XLOC_017928
TCONS_00035387 other upstream 2642005 12605718 ~ 12607421 (-) True XLOC_017943
TCONS_00035389 other upstream 3056776 13020489 ~ 13140227 (-) False XLOC_017951
TCONS_00035393 other upstream 3240353 13204066 ~ 13208752 (-) True XLOC_017952
TCONS_00035395 other upstream 3405514 13369227 ~ 13369343 (-) True XLOC_017955

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000051_05320361_05322570.mRNA True 2247 mRNA 0.41 2 CI01000051 5320361 ~ 5323905 (+)
bowfin (Amia calva) AMCG00000252 True 915 mRNA 0.51 2 CM030141.1 8585904 ~ 8587355 (+)