RNA id: TCONS_00035568


Basic Information

Item Value
RNA id TCONS_00035568
length 1935
lncRNA type antisense
GC content 0.40
exon number 1
gene id XLOC_018044
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 22043510 ~ 22070176 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGTCAACATACAACGACACCAACAAGAGGGTTTTATTTCAAGAATGATACAATGTCATTCGCTAAAAGACGTACTAGAGACATCAAATATGAACCGAAACACGGTCGAATCGTCCGTGAGGCTCCGCTTTAACGTCAAATAACCCGAATTCACCTTCAACGAGAAACCGAAACACCGCGTACACTTGCTGTCACCGGGTTTTAACCTCTTAATTCTCATAAAGCTCTAGCAAAAACATGCAGGCGGATATGTGCAGCACGTACCGTTTAAAAGAAAAGCAGTTAATTACCGGCATTATCTTCTCTTTAGTCGCCTCACTCCCCGTTCACATGATAATTAAACGAAGCCGAATGATGTGCGAAGCTGCAATAAATGCCAAAATCTCCAAGCTGCTAACTAATTCTGTGCGACTCACGCTGAGGTTTAGTCGGCGGGTATGTATATATTCAGCCGAGATCGCTACAGGTTGCTCTGGTAGAGCCGCGATAAAATGGTCAGGTTAAATTGGATTTAATTCCCATCCTCACAGTCGCAACCCCAGCCAAAGCGTCGGGTTGTGTGGTAAAGTAAACGAGCGGCTTCACGAGTACACACAGGCTTGCGTGCAATGCGTTAATTTCATCGACACGCTCATTGAAATGCAGGTTAAATGTGACCTGGAGAAGCGCGAGTTTACATTCTGACAAGCCCGCGTCATCAGTATAAACAGGGGCTGTGCGTGTGTATAAGCGGATAAATATAGTAACAAAGTTTAAAATGCAAAGCCACAAAGGTATAGCGGCTGTACGGACTAAATCATTGGATGCACGAGAGCTGTCCGGGCTTTAAATCGGTTGCGAACATTTGGCAGCGCAACATCGTACACTCCCCTTGTCTCACTAGGGTAGAACAAATGTGGGTCACCGGGCCTTCGGATTCTTCCCAGGCAAGCATTAAAAACACACCAGCGTATTTTCACCGCAAGAACGCTTCTATTAAATCCGCCACAAATGCGACACCGTAGACATGCAGCGCTTTCTCAAAATATCACTGTTTTGCAAGTCCGCTTGTTCCCTTACCTTGGTTACTTGCCGTCCAGGAGGGGGATTTTCTTGCGCCTTGTTTTGGTTGAGACGGCAGTGTAGGATTGAACTAGAGTTAGAAAAACAGCAGGGCCTACCCCAGGCTTCCCAAGCGCATGCGCGGTGCGGCTCGAGAAGAATCCCACACAATCTGGCAACACGCAGCAAGAGCTTGGCTGCTAGTTGGCACGCGAGAATCTACTAGAGCTTTTATTTATCTCATTGTTTTTATTCATCatgaaatataatattaagtgCATTTTAAAGAAATCAAGCAGATCGCAGGTAGTTCCCAAAATGCCATATTTAACGAACAAATCACTGATTTCCATAAAGATAACAAGAAATGTGCAAagacaaaaatgctgggttatttgaaaacaaaatttgGTACAATATAGACATACTCAACCACGGggttacatgtttgtttgtttttgtattcaaTTTATAGCCAACTTttacccaacagttgggtttatATGTATTTAACccaaagtttttgttttcaaaattactttgtttttcagataaagaaATCATgaattatgattttttaaaataataaatacaaattatcattataaaattatggaaacaattaaataaaagtctcaagcaagcaaataataattaatgataattataaataaaatagcatCACTAAGTGCCCTAAAATATGAACCAAACACATTAAAAGTCTGTCCATTTTCCcaatacatttattttctgaCATAATTTAATGACACTATGAATAGTTTAATTTTGGTATTTAATTAAAGGCTTATTGACCGCAGAGATGTAAAAATGTCGGTAACAATAAACATAGAAAACCTTCCTGTGCTTTAAAGGTTGCGTTTCGGCGTGAATTTTA

Function

GO:

id name namespace
GO:0006750 glutathione biosynthetic process biological_process
GO:0019184 nonribosomal peptide biosynthetic process biological_process
GO:0017109 glutamate-cysteine ligase complex cellular_component
GO:0008988 rRNA (adenine-N6-)-methyltransferase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000155568

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00035567 lncRNA downstream 52865 21999156 ~ 22015295 (-) True XLOC_018043
TCONS_00035554 lncRNA downstream 1137601 20928839 ~ 20930559 (-) False XLOC_018039
TCONS_00035549 lncRNA downstream 1246373 20820483 ~ 20821787 (-) True XLOC_018037
TCONS_00035548 lncRNA downstream 1246398 20818154 ~ 20821762 (-) False XLOC_018037
TCONS_00035547 lncRNA downstream 1247016 20817570 ~ 20821144 (-) False XLOC_018037
TCONS_00036464 lncRNA upstream 319022 22389116 ~ 22432496 (-) False XLOC_018048
TCONS_00036465 lncRNA upstream 362018 22432112 ~ 22432495 (-) True XLOC_018048
TCONS_00036827 lncRNA upstream 581882 22651976 ~ 22659422 (-) False XLOC_018051
TCONS_00036466 lncRNA upstream 582154 22652248 ~ 22652956 (-) False XLOC_018051
TCONS_00036828 lncRNA upstream 582727 22652821 ~ 22659381 (-) True XLOC_018051
TCONS_00035562 mRNA downstream 73259 21815613 ~ 21994901 (-) False XLOC_018042
TCONS_00035563 mRNA downstream 158084 21815953 ~ 21910076 (-) False XLOC_018042
TCONS_00035564 mRNA downstream 158117 21816069 ~ 21910043 (-) False XLOC_018042
TCONS_00035558 mRNA downstream 261990 21638397 ~ 21806170 (-) False XLOC_018041
TCONS_00035569 mRNA upstream 116203 22186297 ~ 22193190 (-) True XLOC_018045
TCONS_00035570 mRNA upstream 124224 22194318 ~ 22198982 (-) True XLOC_018046
TCONS_00035571 mRNA upstream 265417 22335511 ~ 22378401 (-) False XLOC_018047
TCONS_00035572 mRNA upstream 265837 22335931 ~ 22378401 (-) True XLOC_018047
TCONS_00035573 mRNA upstream 365086 22435180 ~ 22476255 (-) False XLOC_018049
TCONS_00035566 other downstream 158026 21897971 ~ 21910134 (-) True XLOC_018042
TCONS_00035565 other downstream 205256 21839504 ~ 21862904 (-) False XLOC_018042
TCONS_00035557 other downstream 736032 21332014 ~ 21332128 (-) True XLOC_018040
TCONS_00035544 other downstream 1246371 20817229 ~ 20821789 (-) False XLOC_018037
TCONS_00035579 other upstream 840104 22910198 ~ 22910312 (-) True XLOC_018054
TCONS_00035581 other upstream 1011566 23081660 ~ 23081796 (-) True XLOC_018057
TCONS_00035582 other upstream 1011975 23082069 ~ 23082190 (-) False XLOC_018056
TCONS_00035586 other upstream 1091185 23161279 ~ 23163257 (-) False XLOC_018059
TCONS_00035590 other upstream 1153806 23223900 ~ 23226376 (-) True XLOC_018061

Expression Profile

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