RNA id: TCONS_00035570


Basic Information

Item Value
RNA id TCONS_00035570
length 1015
RNA type mRNA
GC content 0.44
exon number 5
gene id XLOC_018046
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 22194318 ~ 22198982 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGTATCTTCACAGAAGAGGACGATAGGATGCTGCTGCGATGTTTCATATTTTAAGTATAGTTAATATAATATGGCTTTTGTTAGCGCTATGTTTTGGTGCAGCCTTTTGCCTCAATAAGTTTTCAGTGAAACTGCCTAACAGAGTCGAGCACGTGTTCCAGGATTTTATCCGGTATGGAAAAACTAAGGAAAACATCAAACGCGCTAGCTGGCAGCTCGTTTTTGACTTATCAAAGAGGTATTTCTATCATTTCTATGTGGTGTCTGTCATGTGGAATGGGCTCCTCCTACTGTTTTCCATACGGTCTGTCGTAATGTCTGAGGCGTTCCCTGATTGGATCATTGACGTACTTGGGAGTTTGACTGGCAGATCAAGGGGTGCTTGGAACGAGATACATCTGTCCACTCTGCTTTTACAAGTGCTCCTATGGGTTCATACACTAAGACGACTGTTGGAGTGCCTGTTTGTCAGCGTATTCTCTGATGGTGTGATCAATGTGGTTCAATATGCATTTGGCTTGAGTTATTATATCATACTTGGACTAACTGTGCTGTGTACAAATGATTCTCTTCCACAGTCAGAGTCAGTTTCTTTCTTTAATCAGCTAACATGGTATCATGTAGTCGGGACTCTTCTCTTCTTCTGGGCCTCATTTCTCCAGCACCAGTCCCTCTCTCTGCTGGCCAAGATGAGGACTGACAGCTCAGGTAAAGTAGAGACTCTGGCCCACAAGATGCCGTGTGGCGGTTGGTTTGAGCTGGTCTCTTGTCCACATTACCTGGCTGAGCTTCTGATTTATGCTGCCATGTGTGTTTGCTGTGGATGTGCTTCACTAACCTGGTGGATGGTGGTGCTGTACGTTCTCTGTAACCAAGCACTTGCTGCACAGCTCTGTCATGAGTACTACAGGAGCAAGTTTAAGACATATCCACATCACCGAAAAGCTTTCATCCCTTTTGTCCTGTGAACAAAAATACCTTTTATATGGaactaaataaatgtaagaaCATCTCA

Function

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0016095 polyprenol catabolic process biological_process
GO:0019348 dolichol metabolic process biological_process
GO:0006488 dolichol-linked oligosaccharide biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0019408 dolichol biosynthetic process biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003865 3-oxo-5-alpha-steroid 4-dehydrogenase activity molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0047751 cholestenone 5-alpha-reductase activity molecular_function
GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors molecular_function
GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor molecular_function

KEGG:

id description
ko00140 Steroid hormone biosynthesis
ko00510 N-Glycan biosynthesis

ZFIN:

id description
ZDB-GENE-030131-7915 Predicted to enable 3-oxo-5-alpha-steroid 4-dehydrogenase activity and oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor. Predicted to be involved in dolichol biosynthetic process; dolichol-linked oligosaccharide biosynthetic process; and polyprenol catabolic process. Predicted to act upstream of or within lipid metabolic process. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Human ortholog(s) of this gene implicated in Kahrizi syndrome and congenital disorder of glycosylation Iq. Orthologous to human SRD5A3 (steroid 5 alpha-reductase 3).

Ensembl:

ensembl_id ENSDART00000063578

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036826 lncRNA downstream 124142 22043510 ~ 22070176 (-) False XLOC_018044
TCONS_00035568 lncRNA downstream 124224 22068160 ~ 22070094 (-) True XLOC_018044
TCONS_00035567 lncRNA downstream 179023 21999156 ~ 22015295 (-) True XLOC_018043
TCONS_00035554 lncRNA downstream 1263759 20928839 ~ 20930559 (-) False XLOC_018039
TCONS_00035549 lncRNA downstream 1372531 20820483 ~ 20821787 (-) True XLOC_018037
TCONS_00036464 lncRNA upstream 190134 22389116 ~ 22432496 (-) False XLOC_018048
TCONS_00036465 lncRNA upstream 233130 22432112 ~ 22432495 (-) True XLOC_018048
TCONS_00036827 lncRNA upstream 452994 22651976 ~ 22659422 (-) False XLOC_018051
TCONS_00036466 lncRNA upstream 453266 22652248 ~ 22652956 (-) False XLOC_018051
TCONS_00036828 lncRNA upstream 453839 22652821 ~ 22659381 (-) True XLOC_018051
TCONS_00035569 mRNA downstream 1128 22186297 ~ 22193190 (-) True XLOC_018045
TCONS_00035562 mRNA downstream 199417 21815613 ~ 21994901 (-) False XLOC_018042
TCONS_00035563 mRNA downstream 284242 21815953 ~ 21910076 (-) False XLOC_018042
TCONS_00035564 mRNA downstream 284275 21816069 ~ 21910043 (-) False XLOC_018042
TCONS_00035558 mRNA downstream 388148 21638397 ~ 21806170 (-) False XLOC_018041
TCONS_00035571 mRNA upstream 136529 22335511 ~ 22378401 (-) False XLOC_018047
TCONS_00035572 mRNA upstream 136949 22335931 ~ 22378401 (-) True XLOC_018047
TCONS_00035573 mRNA upstream 236198 22435180 ~ 22476255 (-) False XLOC_018049
TCONS_00035574 mRNA upstream 237394 22436376 ~ 22464250 (-) True XLOC_018049
TCONS_00035575 mRNA upstream 284066 22483048 ~ 22484621 (-) True XLOC_018050
TCONS_00035566 other downstream 284184 21897971 ~ 21910134 (-) True XLOC_018042
TCONS_00035565 other downstream 331414 21839504 ~ 21862904 (-) False XLOC_018042
TCONS_00035557 other downstream 862190 21332014 ~ 21332128 (-) True XLOC_018040
TCONS_00035544 other downstream 1372529 20817229 ~ 20821789 (-) False XLOC_018037
TCONS_00035579 other upstream 711216 22910198 ~ 22910312 (-) True XLOC_018054
TCONS_00035581 other upstream 882678 23081660 ~ 23081796 (-) True XLOC_018057
TCONS_00035582 other upstream 883087 23082069 ~ 23082190 (-) False XLOC_018056
TCONS_00035586 other upstream 962297 23161279 ~ 23163257 (-) False XLOC_018059
TCONS_00035590 other upstream 1024918 23223900 ~ 23226376 (-) True XLOC_018061

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000325_02450411_02452263.mRNA True 2087 mRNA 0.39 5 CI01000325 2450366 ~ 2453240 (-)