RNA id: TU785260



Basic Information


Item Value
RNA id TU785260
length 204
lncRNA type antisense_over
GC content 0.43
exon number 2
gene id G689677
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 25399275 ~ 25399585 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


cacaaTGACACTTGTGTTGGCACAATAAGAAGTGGAACGTTAAGTAGGCCTAAACAGTAAGTTAAAGGTAAAAGTTGTGACTTACCTGAAGTTATGAGCGCGCTGATAAGCCAAATATGCGTCGAGTTGGTGAGTATGTTTATGGGATAGGTTACACCCCTTTCAGATGAAGTCAAGTACTGAGCGCGTTCGTTTAGCATGGCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU785242 lncRNA downstream 54053 25344878 ~ 25345222 (-) True G689659
TU785194 lncRNA downstream 81678 25252752 ~ 25317597 (-) True G689620
TU785221 lncRNA downstream 92853 25305639 ~ 25306422 (-) True G689644
TU785178 lncRNA downstream 163032 25233139 ~ 25236243 (-) True G689606
TU785159 lncRNA downstream 177975 25217015 ~ 25221300 (-) True G689593
TU785263 lncRNA upstream 8212 25407797 ~ 25408072 (-) True G689680
TU785264 lncRNA upstream 9087 25408672 ~ 25408969 (-) True G689681
TU785266 lncRNA upstream 10144 25409729 ~ 25409976 (-) True G689683
TU785267 lncRNA upstream 10404 25409989 ~ 25410308 (-) True G689684
TU785270 lncRNA upstream 12493 25412078 ~ 25412457 (-) True G689687
XM_021612107.2 mRNA downstream 72977 25323627 ~ 25326298 (-) True LOC110529676
XM_021612109.2 mRNA downstream 78463 25310439 ~ 25320812 (-) True LOC110529677
XM_021612108.2 mRNA downstream 78477 25310439 ~ 25320798 (-) False LOC110529677
XM_021612111.2 mRNA downstream 89492 25307431 ~ 25309783 (-) False LOC110529678
XM_021612112.2 mRNA upstream 16692 25416277 ~ 25490274 (-) False LOC110529680
XM_021612113.2 mRNA upstream 16692 25416277 ~ 25490274 (-) True LOC110529680
XM_021612115.2 mRNA upstream 97988 25497573 ~ 25503434 (-) False LOC110529682
XM_021612114.2 mRNA upstream 97988 25497573 ~ 25503435 (-) True LOC110529682
XM_021612136.2 mRNA upstream 344439 25744024 ~ 25758345 (-) False LOC110529692
TU784591 other downstream 401440 24996765 ~ 24997835 (-) True LOC110529665
TU784418 other downstream 662235 24736046 ~ 24737040 (-) True G688922
TU784009 other downstream 717849 24680967 ~ 24681426 (-) True G688537
TU783950 other downstream 768226 24629554 ~ 24631049 (-) True G688480
TU783821 other downstream 959075 24438965 ~ 24440200 (-) True LOC110529658
TU785268 other upstream 11238 25410823 ~ 25411132 (-) True G689685
TU785308 other upstream 117981 25517566 ~ 25521288 (-) False G689723
TU785310 other upstream 118878 25518463 ~ 25521288 (-) False G689723
TU785403 other upstream 264580 25664165 ~ 25664665 (-) True G689810
TU785453 other upstream 402379 25801964 ~ 25805475 (-) False LOC110529694

Expression Profile