RNA id: TU785310


Basic Information

Item Value
RNA id TU785310
length 1621
RNA type TUCP
GC content 0.49
exon number 9
gene id G689723
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 25517566 ~ 25521288 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGAAACTATGGTTCTTGAACGTACAAACAAATAGAGAAAATGTAGTCGCTAAGGGTGTCAAACCTTGTTAGTAAGGGGGCATGTACTGATGTTTATTCTATTAAGGGCAGATGTTTGACAAATAAATAGATTTAAATGAAAAACACTGGTAGAAATATCAGACACCCGCGAAAAACAAAATCAAACAAAACAATACCACAAACATACATCTAAATATGTCCACGTCTACCAGTGGAGTTAGATTTGAAATATTATTTCACAAGTCCATTGGGTTGGTGAAAAATGTCACATTTCTGTGAAGTTGAGCTCCCTCTGATTCTCAAAGCTGCTATAGGcccatatactgtataatacaaaATGAGTATCCAGTGTAAGCCTAAGCATGGGCAAATCACTGTGCTCCTTAGGGCAATAGGCAACATTCTCTATGCACAGTACCCTCTTGTACTGTAGGAATGCATTCTTCCCTCAGCAATGggacagtccaaaatcatatcaACACAACAGTTATGGCCAGCATCTCCCTATTAGTCATTTTCTTAGCTCTTACCTCTGGGAAgtgtgtacacacaaacacaagagcTGTCATTGTGCAAGTCTATGGTAGCGAGTGAGGGGCATAGCCACATGACATACAGCCATGCTCTCACTCCCTGGTATGGTGCCATCTGAGCTCAGTCCTTGGCGTCACCCACCCCATCTGCGTTGATGGCAAACATGGCTTCAGACTCAGGGAGGCAGGGCGAGTCGTAAATTTTGCAGATCCTCGTTTCGCCGCGGCCTTTCCTCAAGTACAGTCGGGTAGTGGAGGCATGTGCCATGATGTTGCCCCCGATAGGTTTTTTAGGGTCTGCTGAGAACATGGCGGCACCGTCTACCTGGGCCACCACCTGATTGGTTATCACCACAGCAACGCCAAACTCGTCTGCTAGCCTTAGCAGCATTCTCAGGAAGCGTCCCAGGTGGCCTTGCCGTGCAGCGAGCTCTCCCCTCCCGGAGTAGTCGGTTCTGTAGAGGGCTGTGGCACTGTCCACTATCAGCAGGGCATACCTGGACTCTGCCATCATGGCTGAGGCTTGGTAAAGAAGCTGGGTCTGGTGGTCTGTGTTAAAGGCCCTAGCGTAGGCTACGTTGTCCAGAACGTCACTCCCAACAAGTCCATACCGCTCTGCTACAGCCAGTAACCTCTCTGGTCTGAAGGTCCCCTCTGTATCAATGTACATGGCTTTTCCCTCTCCACCACCCTGGTCAATGGGCAACTGGCAGGTGACTGCAAGGGTGTGGCACAGCTGTGTTTTTCCTGTCCGGAACTCTCCAAACATTTCTGTGATGGAGCCTGTCTCTATcccacCCTGTAGCAGCTTGTCCAGCTCTTTGGACCCAGTGGAGATCTGGATGATTTCAGCTCGGCGTTGGTGGAACTCTGTTGCTGTGGTGAAGCCCATGGGCACTAGTTTGGCAGCTTCAGCCAGAACTTTGTCTGCTTTGGCCTCACTGATCCCCTTGATGTTAAGCAGCTCCTTCTTGGGGGCATAGGCCACTGCCTCAATGGTGTGGAAGCCTGCATCCTCCAGCTTCTTTATGTCACTGGCACTGATGCCACATTGCTGTGTAGGAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU785315 lncRNA downstream 3309 25514401 ~ 25515154 (-) True G689728
TU785271 lncRNA downstream 105335 25412850 ~ 25413128 (-) True G689688
TU785270 lncRNA downstream 106006 25412078 ~ 25412457 (-) True G689687
TU785267 lncRNA downstream 108155 25409989 ~ 25410308 (-) True G689684
TU785266 lncRNA downstream 108487 25409729 ~ 25409976 (-) True G689683
TU785324 lncRNA upstream 13669 25534957 ~ 25535231 (-) True G689737
TU785328 lncRNA upstream 19799 25541087 ~ 25541386 (-) True G689741
TU785329 lncRNA upstream 21011 25542299 ~ 25542596 (-) True G689742
TU785334 lncRNA upstream 65093 25586381 ~ 25587286 (-) True G689747
TU785373 lncRNA upstream 126850 25648138 ~ 25651980 (-) True G689780
XM_021612114.2 mRNA downstream 15028 25497573 ~ 25503435 (-) True LOC110529682
XM_021612115.2 mRNA downstream 15029 25497573 ~ 25503434 (-) False LOC110529682
XM_021612112.2 mRNA downstream 28189 25416277 ~ 25490274 (-) False LOC110529680
XM_021612113.2 mRNA downstream 28189 25416277 ~ 25490274 (-) True LOC110529680
XM_021612107.2 mRNA downstream 192165 25323627 ~ 25326298 (-) True LOC110529676
XM_021612136.2 mRNA upstream 222736 25744024 ~ 25758345 (-) False LOC110529692
XM_021612135.2 mRNA upstream 222736 25744024 ~ 25758350 (-) True LOC110529692
XM_021612138.2 mRNA upstream 237589 25758877 ~ 25775027 (-) False LOC110529693
XM_021612137.2 mRNA upstream 237589 25758877 ~ 25775028 (-) True LOC110529693
LOC110529218 mRNA upstream 275612 25796900 ~ 25800394 (-) True LOC110529218
TU785268 other downstream 107331 25410823 ~ 25411132 (-) True G689685
TU785239 other downstream 111116 25376122 ~ 25407347 (-) True G689656
TU784591 other downstream 520628 24996765 ~ 24997835 (-) True LOC110529665
TU784418 other downstream 781423 24736046 ~ 24737040 (-) True G688922
TU784009 other downstream 837037 24680967 ~ 24681426 (-) True G688537
TU785403 other upstream 142877 25664165 ~ 25664665 (-) True G689810
TU785453 other upstream 280676 25801964 ~ 25805475 (-) False LOC110529694
TU785454 other upstream 280742 25802030 ~ 25805475 (-) True LOC110529694
TU785641 other upstream 443891 25965179 ~ 25965493 (-) True G690033
TU785681 other upstream 469390 25990678 ~ 25991143 (-) True G690073

Expression Profile