RNA id: TU785373


Basic Information

Item Value
RNA id TU785373
length 3753
lncRNA type antisense_over
GC content 0.40
exon number 2
gene id G689780
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 25648138 ~ 25651980 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCAAAAAGTCTTTATTTCTGAATCCCAATGAAAAATAATGCCACATTTATGCCCACACAGCAAATGAAAACATTCtttgcacaggaggttggtggcaccttaattggggaggatggtttgtggtaatggctggagccttcctcccttcagcagcctacACTGGTTCTTTGTTCACAAAAGCTGGTGCATTCAATTGTTCAGTTTCTCATCTACAAAGGGGGCATCAAAGGGAATGAAATAACTTAAATATAAATTCTTTAACATTTTCTTACCCCCCCAACTTACATGGTGAATCACCAGGGAAGGACCGGTCGATAAGCAACAATTAGGTCAATGATTTCAAAATAaggaagtaaaaaaataagtaaatatACAAAACTGGAATGGGTCAACAaaattaaatatatgttttacaTTCATTTATCATTTCTTTAACATTAATTATTAATTGTATTGTTCAGTGAACATTTTGAACCATTTCCTAAATAAATAATTTATATTCAGAGGGGTTTCAACTAACTTCAAATTAAATAAGGCCTTAACACTTAACAAACCTAGAATCTAGGGCATCTGGACACAACGTAAATTACCACTAGCAAAATGTGGATACCCTCACTTGGATTCAATTAAGACCATTGAGGTATTTACGTCTCAAATATTTGTGATTTAATATGTAAAAAGTTAAGATTCTCATTTGTTTTCCTTGACTAACATACCATACATAGCCAGTGAGTTTGTGACAAATCACTGATACAAATGCATTGAATTGTTGGCCTCACAGACCTGCCCGCACAATCgcttgtgtacacacacacacaaatacatagtCCTCCTTCCTTGATGGTGGATAGTCACAGCCTTGGTGTGTTTCGCTGCACCAGTAACTGTCTATGTACAGTAGCTGTCTGTCTAAAAGGGTTGAGTACTGTAACAGTGACCTCAGTGAGGTGTTGCTAAAAGCATTGGGGAGAAAACACCCAATAACTGGAAAGGATCGCAAAACAATAGAAAAATTAAACGTACAAACAAATAATAGGCTACCTGTTGACAATCTAACAGCAAAGAGAAGGTCAATTTGTTGGTAGAACAGAACATTCACACCATTCATTTTGTACACTCAATTCCAGAGGTTCGTATCAGTACATGAGCATGCCTTTCAGATGATCATATTCCCCAGTTGTCAGTCAGTGCGACTCCGGTAAGGTTAAGGGTCAGGGCGAGGTTGTAAATCTCACACAAACTAAACAAGACTTTGGTCACAGTTCTAGCTAAAAGAAAGACATTCATTTCAAACCATCCATTTTGTATCAGCTTTGCCCAGCCCCCTATCCCATCTACCCTCACGAGGATTCCAGTCACAAATATGTTTGCTCCTTCTTTCCTCTCATATCACAGCCCTATGTTATTGCACAATTACATTTACTTAGACCAGGTAGTCTTCCCACAGTATACAGAAACTGTCCACCAAGCTAAGGGTCTTCAGAATATGTACTGGAACATGGCTGGTAAGAGTTTTGTTATACATTGTTCGGACTGTGACCTGTGCTCTCAATACCAGATAGTTGTGGAGCAACTGCTTGGTTGGTAAATCGTTTTAAAATCTTTACAGGCAAGCTCCAGACTCTTCCGTTGTTAAAGCCATGCATGTGTCAGCATTCAATGGCATGCTGGTAGaaaaacacatttgttttttaaagttGATTTCTATTATCATCATGTAGCTAGCAGCTAACAGGTCTACGAGCATGGTTCTCTGCTAGATATAAAAAAGTGACTTTTATTAGCTATCTCAATGTACTTTGAAGTTGTATATGTCTATAGCTTTGATAGAGAAATATAAACCAACAAAAGGGTTCCTTACACATGATTTCAACAGAGCCCATTTGTTTAATGGGTAAATGGATATAGTGGCCTTTCTAACAAAATAAGTACGTACATCCAGTCATTTCACCATACAACCTAATATGTATCAGGGAAAATACGTATCTTCCCTACTGTGGTTGCAGCAGCAACTTTTGCCCGCTGAGTTGTACCGGAATATCCAGATTGCTATTCGCATGAAAACAATCTATTTCCCAAATCATAAAAGTAGCCAGATACACCAACACCCCACAAAAATGTCCTTTATAATCACCGTTTTGTGAATTTCACTCTGCGACCACGCCAATTCACAGATGGTGTGATCCCGTTCACCAAACTTTCACTGTACTGTAGTCACTCTAACTAAGGAAAGCTTAGGCCAGAAGGCGAGGGAGGCCAGGAACACTGAAGAAAAGTAGAATAACAGATCATTCTATAGACTCCATTTCAGTACTCTAGTCCTCACTGCTactagaaggtgtgtgtgtttgggaggaTCAACATTTGAGAGGTGAGAGACAGCAGGGTCATGTTCAGAAGTCACAAAATAGGAGAAAGCAAACAGGAGGTGCTACGGCAGGGTTgggcagctttccaaaaacaaagTATCTGATTGTTTAGAGTAATAATAGTacaatacacaaggtgcaattttgaaatgaGCAGTTTCTCTTGTTatatcagtcactgacagtccctcaattagcccatgtcagctaagatATTAtagattggtagttagtctaaccagctatctaaacttgtagtaattaTGGTCAATTTAACGGCCGGGGGCCCCATTTGATTTtattagtcactctcactcagatatattaaaaactgcaaaactgcatattaaaaacatttctctccaccctatggcaaaatgtgtagaattgcaattCTAACTTAGGGCCCctcaaaaggctagggccggactgagtgcatgtgtgggtatggatttGGGTAAGCAGACCCGcgagccactgcggcccctcGTGATGAGTTCcgtttttttgtggcccccaccctcaccaaagttgcccatccctgtgcTACGGGAACTTGTTTAATAAGAACACATATTTTCATTTTCTATTTCAAAACGTTTTGCTTTGtggtgccctactgaacacaacccaggtgtgGAGCTTTAGTGTTACCTCTCACAAACCTCTGAATATCTGTGAGTCTTTGAGAGCACAATGGCAGTGGTGGCTAGTAGAAGATGGGAAGAAGGAGGACTATTTCTAAAGATCACGCTATGATGTTTCCTTTGCTCCATCAAAATATAAAGCTAATAATTTGTAGAAATAGATAGTGTACCGTTTAAAAAGCTCATTTTCAAAGATTGTTTATAAATGTGCTTCTCTTTTGAGGCTAGCTGCATATGTATCATTGACAGGAAATCATGTTGCCATGAAGAATTAGGTTGGCCGGTCACCACTGTATCTTAGTGACTTTTGACCTCTAGTCCAAGTGTGTTCCTATTGGCAGGCAACCGACTCCTCCCCTCTAAGCAACACAAGTACAGTATTTGAAACACTGGTGACAACAAGGGAGACTCAATAGTCGAAAGTGGCCTtccactcctcatctcctctcctcccctggacTCATCTGAAGAGGAGAACAGGCTAAGAAGCCACACTAGACAATTGAGATGTTCCCCAACAATTACAGAACAAACAGACAAAAAAGAAGATAAACATGAGTGAGGTCATAGATGGCCTATGAGGATGAGGTCTGTTCAGAGATTGGGGCATTAAGGTGAGAGCAGTATGGTCTataagagggtgaggagagggtagGGGGTCTAGGCTTCGGTTTAGGTTCAGGCTGTTCCACTGGCAGAGTAGGAGAACTGGGGGAAGTGGGGTCTCCTGTCGCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU785334 lncRNA downstream 60852 25586381 ~ 25587286 (-) True G689747
TU785329 lncRNA downstream 105542 25542299 ~ 25542596 (-) True G689742
TU785328 lncRNA downstream 106752 25541087 ~ 25541386 (-) True G689741
TU785324 lncRNA downstream 112907 25534957 ~ 25535231 (-) True G689737
TU785309 lncRNA downstream 126850 25519159 ~ 25521288 (-) True G689723
TU785392 lncRNA upstream 1033 25653013 ~ 25653367 (-) True G689799
TU785401 lncRNA upstream 10508 25662488 ~ 25662707 (-) True G689808
TU785417 lncRNA upstream 29764 25681744 ~ 25682799 (-) True G689820
TU785420 lncRNA upstream 32542 25684522 ~ 25684796 (-) True G689822
TU785421 lncRNA upstream 35502 25687482 ~ 25687687 (-) True G689823
XM_021612114.2 mRNA downstream 144703 25497573 ~ 25503435 (-) True LOC110529682
XM_021612115.2 mRNA downstream 144704 25497573 ~ 25503434 (-) False LOC110529682
XM_021612112.2 mRNA downstream 157864 25416277 ~ 25490274 (-) False LOC110529680
XM_021612113.2 mRNA downstream 157864 25416277 ~ 25490274 (-) True LOC110529680
XM_021612107.2 mRNA downstream 321840 25323627 ~ 25326298 (-) True LOC110529676
XM_021612136.2 mRNA upstream 92044 25744024 ~ 25758345 (-) False LOC110529692
XM_021612135.2 mRNA upstream 92044 25744024 ~ 25758350 (-) True LOC110529692
XM_021612138.2 mRNA upstream 106897 25758877 ~ 25775027 (-) False LOC110529693
XM_021612137.2 mRNA upstream 106897 25758877 ~ 25775028 (-) True LOC110529693
LOC110529218 mRNA upstream 144920 25796900 ~ 25800394 (-) True LOC110529218
TU785308 other downstream 126850 25517566 ~ 25521288 (-) False G689723
TU785310 other downstream 126850 25518463 ~ 25521288 (-) False G689723
TU785268 other downstream 237006 25410823 ~ 25411132 (-) True G689685
TU785239 other downstream 240791 25376122 ~ 25407347 (-) True G689656
TU784591 other downstream 650303 24996765 ~ 24997835 (-) True LOC110529665
TU785403 other upstream 12185 25664165 ~ 25664665 (-) True G689810
TU785453 other upstream 149984 25801964 ~ 25805475 (-) False LOC110529694
TU785454 other upstream 150050 25802030 ~ 25805475 (-) True LOC110529694
TU785641 other upstream 313199 25965179 ~ 25965493 (-) True G690033
TU785681 other upstream 338698 25990678 ~ 25991143 (-) True G690073

Expression Profile