RNA id: TU787231


Basic Information

Item Value
RNA id TU787231
length 3843
RNA type TUCP
GC content 0.40
exon number 2
gene id G691447
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 26864210 ~ 26868078 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATTGTGATTGTCTTGATTTAATTACACATTTTAGAGGTGGACAGTTCTGGGATATTTTAATTAATCCTCTTGATAAGAAATGCCTATACAGTGTTAAGACAAGTTGTTGTTAAAGAATTACATGAATTGGAGATGTTAAAGTACGTACACATGAGTTTTCCATTCATAAAATGTGTAGGGTAACTTGCAACAGTAGATTTTGCATGGAAAACGAGGAAATAGTTTATTTCAGTTGTACGGAATGATTGTCAAATAGGTAAATCTGCACTTGGTCTGCTCAATGACCAGGTGTATACCACAAATAATACCCTGTCGAGAAAAAAATGAAACCATTTTGGGGCGAAAGCAGACTAACATCACACCGACCGAGCGCGTAGCTCGACTTTAAGGGATCAGGAAATGTTGAAAGCATTTGAGATCCCTGTGCAGGTGATCTTAGTGTGAATTGATGGTTTAACGAGAGATCACCTTGTAGTAATATGGTGGCCAATATTGGTTGCATTTGGCCCTACAGATTTAAGCTCGTCACGTAATAACAGACGAGAATTATCTTGCAATACTATTACGataaaaataaacaacattttGCCATACAGTGCTTTCACCAACTCACCAAATTGTTTCATGAAGTGGACAACAATTTATTTGATTTTCCTAATAATTTTCTTAATATAACCATAATATTTATTCGTAGACCACAAATCCTTAGATCAACGTCCTTACAGTTAACCTATGGCATGTGCCTCCATTTGTCCAAAGGAGCAAAATGACGTCTTGCTTGGAATACAGTTGCAAGCATGGTCTGCTGCTAACTTAGAGGTACGCACATTAAGGTTTTTAAATAATCTGTTGAGGATTTCATTGTAAGCTAAATGTACAATCAAATACGTGCATAAGAATGTTTTATAAACGAGGTCCCTGATGTTTTGAGTTTCAATTTAGTACCACATTTGTATGTGGTACTAAAATCCTATACATGTTCAATGCTCTGCAGTGGTACTAAAATCCTATACATTTCCAACGCTCTGCATGTCACCGGATTGTTTTGCTCTCAActgatttttttgttgtcattCTCAGTGTCAAGATAGAAACAAACACTGATCTTGGTTGCAAGCATGTCAGCCCGTCAGAGATATCGCAaaactgttacagtagtctacATTATAAATAAGACCAAAGAGGTTTAGCTAAAGACATAAcatagaaaaaaaaaaatcaacaaaacGATAGAAAGGAACAGTGACACTAAATAACCAATGTCTGTGTGCTATTTCAAAAGGCAGGGTCAATGTGTATGTGCAATGTAAATGTGTAAAACTGAATGTGGACAGTCAGACAAAAAGGATTGAATATGAAATAAAAACATCTGATTAGGCCTtgtgtgtaaacacagccattgtAATTACATCAGATTAATGCCCCAATAATCATGCCTTGAGATCACAGTGAGTATAATATCCTTCCACTTGCAAGTTGCAAATCTCACATATTTctgagggaaaaaaaacatccAGGAGGGGCATGGTCTCTCTCAAAAGGTAAGGTGCCATTTTTGTGGTATGTTCCTATGAACAAAACTATAAATTCAAGGGAAAATGATAACTGAAATGACATCAAACTGTACTTGTAGGGGTTGGAATTAAGTCCTGTTTATTTGTTTCAAGGGTAAATAATATTGATGTAGTGAGCAAGATAAGGGCCTGTACGGTACAGAGGGGAGATTTAGTCTCAATCCTGTTTCCACAATCAACTTTGTTCCCCTTAATTTTAGAAAGATACACAAATTAAAAAAAAGGTTGACCCAAATCTCATGGGCTCATATAACATGATCTTAATTGTAGCACATGTGATATGTTAGATTTGCTTCAGTTTCTTCATAAAACTACATACAAAAATGAGGGACGACATCTGAACGGGGAGCAGAATTGAACACAGGATCGTTATGATCTGGCTTAAATGTTTTGAAAAAAACTGGGGCCAGTATCTGTGTTTCTATTAAAGGGTCTTCTGTTGGGAGCAGAGCGTAATCAAGAGGAGATGGATTTTGGCTAATATAAAACAAACACCTCCCAGCTAGCACGTTTGGTtctttggaagttgtgggaacacaCATTTTTGGTTTCCTATTGGTTCTGGGAATGAAGCATACatttcctgaccggtaaaacaCAACATTTCttaaacattctgagaacagaagtgaacatTTTTGCCTGTTCCGAGAACATACATTTTTAGGTAgaagggaggttctgagaacattttactacggttccctgaaagttttccaGGAGGTTTTATTAACATTCTGATTTGAACTTAATTAAATAACATTCTaagaacatgtttcaataagacttttaataacactgctagcttagtttaactgttttgaactctGAGCACAGGAAGAACACATGGACATTAATTTGCGTAGGCATtaaatcatgcaaacacatttattttttgcgACATGGCGTCaatgagattcaaacctatgatctgtgttttctatccaatgaaTTAGTCCACTACGCCACCAGGATGGAGtgcaatgtgttttttttactctTACAACGCATTTTAACCTATTCAAACAGaacccatttcaaaggaaacaagcactcattaagatcaggtgtggccaacacctgaacacacttaaaaAATATGCTGTTGACACTGAGAACggaatgtattttttaaaataacattCTAGAACAGTTTGAGAACATTGCTTTAAACAGAACCATGAGGAAACGtaatgctgaagtactgaaattcctacAGAAGAACgttaacgttctctgaactatttgagaacttacccaatgtcaaaccagttggagaacgtttaaaatgtaaccatgtttgaacttttgggAAACTTTGTTATAGTAATGAAATATCTCAGCAcatcaagttccttaaatgtgctgagaatgtttcaAATCCAAGCAACTATCATGCGCCATTCCCAGAAacttgtgggaaggttgtatgcaaaataaccatgagacaaccacactctcaccaagctctaagaaacatatggttctcagaacgttatgtgctagctgggcttACTTTTAACGGCACAGACTGACAACATGACAACTGGTGACAGATGAAaaagacaacccccccccaaaaaagttgcTGGAGATGTTTAGAGTTAACATATATTTTTTAGTCTCCCGGTCACCATAATATAATAGGCATGTGGCCATGTCTCTGCTGTACATATGTACTGTTTAAGCACAAGGGGTGGAGGCTGATTAGCAGATTATCGAGTCTGTTCAGGAGAGGTTCAGGTAGCTGAAGAGGAGGGGAACCAGACAGACGCAGCTGAAGCTCACAGTGCCATAAACGATGTAGCGGTAAGATAGCTCAACTTCCATGTGCTGCCGTGCCTGCCGTACATCACCAGCAGGCAGCCCAAACACCCGGCAGGCCAGCGGAATGGTGGCTGCTTTCATTGCAGCCCGGGTGGCAAGCAGGACGACCACCCCAAGCAGTAGGCGCAGCAGGGAGCGGGCCAATAGGGCAGCACTCAGGGGGGGCAGTGCCAGGGGCAGGGAGGAAAGTGGTGGGTCGGCCAGCAGGCCCAGCTGGTGGTTGAGGTGGGAGGCCAGGGCAGCCCCGGCCCCAGTGCCCAGAGCCTGCGCTGTGTCACCCCGTGAGGTGCTCCATGAGTCCAGGGTGAACGCCAGGAAGCCTAAGCCTACGTGCAGGATGACAATGACTAGTGGTGCATGGTGGCTCGTCAGGTAGAAACTGTCAATCTGGTCCAACGTTGATTGGAAGACGGCCAGGATCAGCAGGCTGTATAGAAAGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU786808 lncRNA downstream 69115 26794837 ~ 26795095 (-) True G691056
TU786806 lncRNA downstream 69593 26794409 ~ 26794617 (-) True G691054
TU786790 lncRNA downstream 97442 26758140 ~ 26766768 (-) True G691038
TU786760 lncRNA downstream 144367 26719644 ~ 26719843 (-) True G691010
TU786758 lncRNA downstream 148703 26715217 ~ 26715507 (-) True G691008
TU787249 lncRNA upstream 19358 26887436 ~ 26887742 (-) True G691465
TU787251 lncRNA upstream 21816 26889894 ~ 26891529 (-) False G691466
TU787252 lncRNA upstream 21816 26889894 ~ 26891529 (-) True G691466
TU787255 lncRNA upstream 28455 26896533 ~ 26896759 (-) True G691469
TU787257 lncRNA upstream 31064 26899142 ~ 26899389 (-) True G691471
XM_021612175.2 mRNA downstream 261276 26599030 ~ 26602934 (-) True LOC110529714
XM_036985193.1 mRNA downstream 267472 26591530 ~ 26596738 (-) True LOC110529713
XM_036985194.1 mRNA downstream 267532 26591530 ~ 26596678 (-) False LOC110529713
XM_021612165.2 mRNA downstream 400849 26444117 ~ 26463361 (-) True LOC110529710
XM_021612166.2 mRNA downstream 400945 26444117 ~ 26463265 (-) False LOC110529710
XR_002474429.2 mRNA upstream 302860 27170938 ~ 27186859 (-) False LOC110529723
XR_002474430.2 mRNA upstream 302860 27170938 ~ 27186859 (-) True LOC110529723
XM_036984518.1 mRNA upstream 376481 27244559 ~ 27284467 (-) False esr2a
XM_036984517.1 mRNA upstream 376481 27244559 ~ 27284491 (-) False esr2a
NM_001124753.1 mRNA upstream 380221 27248299 ~ 27267620 (-) True esr2a
TU786474 other downstream 433367 26429115 ~ 26430843 (-) True cenpw
TU785681 other downstream 873067 25990678 ~ 25991143 (-) True G690073
TU785641 other downstream 898717 25965179 ~ 25965493 (-) True G690033
TU785453 other downstream 1058735 25801964 ~ 25805475 (-) False LOC110529694
TU785454 other downstream 1058735 25802030 ~ 25805475 (-) True LOC110529694
TU787547 other upstream 447490 27315568 ~ 27315935 (-) True G691747
TU788741 other upstream 1247658 28115736 ~ 28116048 (-) True G692859
TU789000 other upstream 1610739 28478817 ~ 28481898 (-) True si:dkey-85n7.8
TU789291 other upstream 1725263 28593341 ~ 28594431 (-) True G693383
TU789639 other upstream 2090317 28958395 ~ 28958832 (-) True G693665

Expression Profile