RNA id: TCONS_00003039


Basic Information

Item Value
RNA id TCONS_00003039
length 1559
lncRNA type inter_gene
GC content 0.37
exon number 3
gene id XLOC_000168
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 12672985 ~ 12677022 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGCTGAACTTCGAAACCGAAACCCCCTTTGCGAGATTCGCCGCATCTATACCTGATTTGCGTTCAAAAATACCTGCTTAATTATTTCATAGTAGGAGCAAACATGCCTTAATAAAAGGAGCACATTTGAAACTTTAGTAACCATAAAAAGTACACCAAGTGGATGCCTTTCTACTCCAGGAAGCCGCAGCATACGGCCTGAAGGAGGAAGGACGCGGTCAGTTTGAAATAGCTGTTGTGATGGAGCTGGACCTGTAGACAAGGGAACTAACACATTTGAGATTGGTGTGTGTGGTGAGTGTAAAGAAGTCCACAGCAGCATCCTTGAAAAGCTGtaatgcaggggtgcccaaacttagtTCTGGATGGCTGGTGAAGTTTAGAGTCAACTTCAACTAAACTCTGCAAGACAGCAGCAGTTCTGGACTGAGTTTGGCCACTCCTGTTCTCCTGTAGTGAATTAAACGAGACCCTGCATCAGTCCACCTGCCCTTGTGTCCTCATCTGGACCAGATGTTGCTGTGGTCTCTTCATCATCCGTATCTCGGGCATTGACTGCCATGCATCACCGTCCTGTTTCAGTCTGACTGCAGCAATGAGGGATGTGATGATGGCGAACTCCATCTGATCATCTGCAGAACTGGCCCAGCTGTGTGGAGATACAGCAAAACATGGGCTTCTGTCTGTAATACATCTCTGTTAGAATAAAGCTTGGTTTCATGTGTTGTTGACTTGTATTTATTCGTCATGATTACTTATATTCattcttttaataatataaatatgtttttgtttgttttcaataaataatgataatactttCAATATTgtatgcatttccattgtttaacagaaatgtaaaaaaaataagatgCATTGTCTAGTGACTTCAAGTAGATTTACTTAGTTAATTTTCCACATTTATCGTTACTAGCAATGCATTCTTGGCTAAAATGTTaagtaaacatacattttttggaATGAAATGAATCATAAAACATGGTAGCAttagttattaaggtaaagttggttttatatttgcacatttaaacattttaatggtccctatattgtttaccatggtactttaaatatttgatctgaatgacttcaaaacaacattagcacaaatatttaactgactgtggacagtgctgtattttgatggtcattggctgctaacatgAATTCCCtatatagaatttgaaaatctttttctgaaattatattattaaggagaaagtcagaatgtgcaacTATAAATCCAGCTTCACCTCAATGCATTGGATGCACCCTGGTCTGCcatttttctaaaacaaatatagcttatgaATTAAATAGTTTAATCGTATTATGTGATAAGACTGAATAGCAAACTTGACATTAGGGCAAGCTAGCCATGTTACCTTTCGTAAAACAAGAATTGTTATCCTAGCTATAAATACTGATCACTAACATAGTTATATTTAAACTAACATCAAAATGTACAACTATAATTGGTTTTATAAAAAGAAGCAATGAAAACGTACCTTAACTGCATTGCTGCTTTCAGGATGTCAT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00000298 lncRNA upstream 315325 12348267 ~ 12357666 (+) False XLOC_000164
TCONS_00000297 lncRNA upstream 317426 12348237 ~ 12355565 (+) False XLOC_000164
TCONS_00000292 lncRNA upstream 339619 12329543 ~ 12333372 (+) True XLOC_000162
TCONS_00000284 lncRNA upstream 485283 12184497 ~ 12187708 (+) False XLOC_000159
TCONS_00003040 lncRNA downstream 247604 12924626 ~ 12937089 (+) False XLOC_000172
TCONS_00003041 lncRNA downstream 247645 12924667 ~ 12937089 (+) False XLOC_000172
TCONS_00003042 lncRNA downstream 247695 12924717 ~ 12937089 (+) False XLOC_000172
TCONS_00003043 lncRNA downstream 247704 12924726 ~ 12937089 (+) False XLOC_000172
TCONS_00003044 lncRNA downstream 254272 12931294 ~ 12937089 (+) False XLOC_000172
TCONS_00000304 mRNA upstream 272208 12394394 ~ 12400783 (+) False XLOC_000165
TCONS_00000305 mRNA upstream 275105 12394479 ~ 12397886 (+) True XLOC_000165
TCONS_00000300 mRNA upstream 275211 12394205 ~ 12397780 (+) False XLOC_000165
TCONS_00000303 mRNA upstream 275639 12394295 ~ 12397352 (+) False XLOC_000165
TCONS_00000302 mRNA upstream 275691 12394264 ~ 12397300 (+) False XLOC_000165
TCONS_00000310 mRNA downstream 86439 12763461 ~ 12763970 (+) False XLOC_000170
TCONS_00000311 mRNA downstream 86439 12763461 ~ 12793458 (+) False XLOC_000170
TCONS_00000312 mRNA downstream 86898 12763920 ~ 12796578 (+) False XLOC_000170
TCONS_00000313 mRNA downstream 89329 12766351 ~ 12797410 (+) False XLOC_000170
TCONS_00000314 mRNA downstream 90296 12767318 ~ 12793593 (+) True XLOC_000170
TCONS_00000307 other upstream 129516 12543359 ~ 12543475 (+) True XLOC_000167
TCONS_00000306 other upstream 241549 12431328 ~ 12431442 (+) True XLOC_000166
TCONS_00000301 other upstream 277704 12394209 ~ 12395287 (+) False XLOC_000165
TCONS_00000299 other upstream 315915 12348358 ~ 12357076 (+) True XLOC_000164
TCONS_00000278 other upstream 595513 12071921 ~ 12077478 (+) True XLOC_000157
TCONS_00000309 other downstream 58898 12735920 ~ 12736034 (+) True XLOC_000169
TCONS_00000315 other downstream 171039 12848061 ~ 12853263 (+) False XLOC_000171
TCONS_00000316 other downstream 171050 12848072 ~ 12853013 (+) True XLOC_000171
TCONS_00000318 other downstream 325956 13002978 ~ 13003067 (+) True XLOC_000173
TCONS_00000325 other downstream 1660189 14337211 ~ 14337313 (+) True XLOC_000182

Expression Profile

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