RNA id: TCONS_00035760


Basic Information

Item Value
RNA id TCONS_00035760
length 559
RNA type processed_transcript
GC content 0.43
exon number 3
gene id XLOC_018141
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 28869969 ~ 28884829 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTATACACAATGTAATTTGAGagacaattaaacacattttattaggCGCAACTAAATATTCCACTATTTGGGctgtgcattattattatttttttcagtttgatttGAATGTTTTATGTGTAGCGTACTGTACTTGGTCCAGGGTTGAGCTTGAGCTGAGATGTTCTCGGACCCCAACTTTCATTGTTCATCAACTTTGATACTTCATAGTAAGTGTAAAAATGATCATCTAACTCCAGAATGCTGATGTGCTGTGTGTAGGATTTAAAGGATTTCATGAGACAAGCTGGAGAGGTTACTTTTGCAGATGCCCATCGGCCAAATCTGAATGAAGGCGTGGTTGAATTTGCTTCTCATAGTGATCTGAAAAATGCCCTGGAGAAGCTGTCTGGGAAGGAGATCAATGGAAGGAAAATCAAACTTGTTGAGGCGTCCAGGAAAAAATCCAGATCTCGCTCTCGCTCGAACAGCTCATCCCGTTCTCGTTCCCGAGGCCGCTCTGCTTCCCGCTCCCGAAGCCGTTCTCGTTCTCACAGCCCTAAATCCCACAACCGCTCC

Function

GO:

id name namespace
GO:0000381 regulation of alternative mRNA splicing, via spliceosome biological_process
GO:0045292 mRNA cis splicing, via spliceosome biological_process
GO:0005634 nucleus cellular_component
GO:0016607 nuclear speck cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003729 mRNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-354 Predicted to enable mRNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in nucleus. Predicted to be active in nuclear speck. Orthologous to human SRSF5 (serine and arginine rich splicing factor 5).

Ensembl:

ensembl_id ENSDART00000023580

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036854 lncRNA downstream 8003 28860442 ~ 28863882 (-) True XLOC_018140
TCONS_00035758 lncRNA downstream 29395 28835369 ~ 28842490 (-) True XLOC_018139
TCONS_00036477 lncRNA downstream 230044 28638760 ~ 28641841 (-) True XLOC_018135
TCONS_00035738 lncRNA downstream 576781 28284780 ~ 28295104 (-) True XLOC_018131
TCONS_00036853 lncRNA downstream 602644 28267530 ~ 28269241 (-) False XLOC_018131
TCONS_00036478 lncRNA upstream 551064 29426938 ~ 29429462 (-) True XLOC_018147
TCONS_00035778 lncRNA upstream 597713 29473587 ~ 29474495 (-) True XLOC_018148
TCONS_00035793 lncRNA upstream 651317 29527191 ~ 29529831 (-) True XLOC_018153
TCONS_00035795 lncRNA upstream 747677 29623551 ~ 29626488 (-) False XLOC_018154
TCONS_00035796 lncRNA upstream 747684 29623558 ~ 29625984 (-) True XLOC_018154
TCONS_00035754 mRNA downstream 29281 28833334 ~ 28842604 (-) False XLOC_018139
TCONS_00035756 mRNA downstream 29322 28833640 ~ 28842563 (-) False XLOC_018139
TCONS_00035755 mRNA downstream 29349 28833555 ~ 28842536 (-) False XLOC_018139
TCONS_00035752 mRNA downstream 29361 28832762 ~ 28842524 (-) False XLOC_018139
TCONS_00035757 mRNA downstream 29361 28833945 ~ 28842524 (-) False XLOC_018139
TCONS_00035761 mRNA upstream 862 28876736 ~ 28884829 (-) False XLOC_018141
TCONS_00035762 mRNA upstream 1993 28877867 ~ 28884800 (-) False XLOC_018141
TCONS_00035763 mRNA upstream 2380 28878254 ~ 28884828 (-) True XLOC_018141
TCONS_00035764 mRNA upstream 10116 28885990 ~ 28932038 (-) False XLOC_018142
TCONS_00035765 mRNA upstream 12879 28888753 ~ 28931901 (-) True XLOC_018142
TCONS_00035753 other downstream 29314 28832762 ~ 28842571 (-) False XLOC_018139
TCONS_00035747 other downstream 259563 28611272 ~ 28612322 (-) True XLOC_018136
TCONS_00035726 other downstream 1560270 27308416 ~ 27311615 (-) True XLOC_018122
TCONS_00035722 other downstream 1646007 27224812 ~ 27225878 (-) True XLOC_018121
TCONS_00035715 other downstream 1817665 27054095 ~ 27054220 (-) True XLOC_018118
TCONS_00035770 other upstream 171309 29047183 ~ 29050045 (-) True XLOC_018144
TCONS_00035788 other upstream 619426 29495300 ~ 29495435 (-) True XLOC_018151
TCONS_00035811 other upstream 1496789 30372663 ~ 30372883 (-) True XLOC_018166
TCONS_00035812 other upstream 1497333 30373207 ~ 30373427 (-) True XLOC_018167
TCONS_00035813 other upstream 1497991 30373865 ~ 30374084 (-) True XLOC_018168

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU396268 True 3144 TUCP 0.44 4 NC_048568.1 38894143 ~ 38897656 (+)
striped catfish (Pangasianodon hypophthalmus) TU396268 False 1178 lncRNA 0.43 3 NC_047616.1 19005522 ~ 19015784 (-)