RNA id: TCONS_00036853


Basic Information

Item Value
RNA id TCONS_00036853
length 1546
lncRNA type read_through
GC content 0.39
exon number 2
gene id XLOC_018131
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 28266327 ~ 28352352 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTACTCATGTTTTGACATTACATACTTCAAATGTTGACAGGCTAAAAATACCATGTTCCCGTAACATCAGCACCTACTGATGTATTACAGTGATAAATTGGTATAGGGAGAATAAAATATCTGAACAGCCACTTAAAATGACAAATCGCACCTTAAGGACGGCAACATTAACTTTATATTAGAACCTTAATGCTGTTTTGACCTATTTGATTGCTTTTCAGAAGATCTACAGGTTTCTATGCGGCCAATAATATGGGTCTAATGGTGGCGAGAAGAGCTGCCTCGATGGAGAACAGGTGAGGGTCGTCCACATCAGGACAGCTGACTCTCATGAACTCCGCCAGGCGAAGCAGGTACTCGATGTTGTGCCCCGAATTCCCCTTGCACACAGCGATCTGAGAGACTCCTCCATCTGAGAGCCAGTCACCTCGAAGGCAACACCCCAGGTGCACACCTGTGTACCAAAACATACGGTTAGTAAACATATGGTGGAGGGAAAGTATTTAAAGTGATGTGTGGCCAAATTTCATCATGTTGTTCTAAACCCATATACATTTTTCTTTCTGTACAATAAAATTAAAGGTAGGAGATATTCTTACGGCTGTAGCCAGGGTCATGCcatgtcaaataataataatggaggGCACATAAGACGTACAGCCGTAATAGTTCTCAGAACATTCACGGTAAACAAGTTCTACAAGGACGTGAATGTTTGGAatcatttaattataaaaattatgccTAGGCTTGAATTCACCTTGTCGAAAAGGTTTGAAGTAACGCCATTATGCTGCCAACTCTTAATATTTTCTTCATAGATATGTATACATGGACAGATACCATAATGATCAAATCTGACATCTTGGAACGGTTAACATGTGGTCAGTAAATTTCCCAACATATTACAATTTAACGCAGCTTCTGATTGTAGAAATCTTTATTTCCTGTACAGTTCCTACAATTAAATAAGCATTTAAACTACATTGCTTTGTTACATTTAGCATATACTTAGATCTTAATTATATTGATACGTTTTATAATTAAGAttgttttgatttaaatataaattcagtAATTAGCACAACCCTACAGTTCCTTggaccccagtttgaaaaccccctGTAACCCTCTTTGTTTTGTTGTATATTGATGCTTAGTAAATGCGGTTTCTGATTTTGATGCAAATATAGACACATTTGTGTCAGCTTGTGTTCCAATATGGTGGATGCCTATTCCGGGTGGCATCTATAGATGTCCTAAGAAATAGCTTGTAAAAATAGCCGCCAACGGGGCTCTCGTGTATGTACATGTATGGTTGGTTGttcctaataataaaaaaggaagtTCCACTTACGTCATCCTCCTCGATGAGCGTCACCACTCTTCCGGGCTGTCATGGAGACACGTAACGTAAAAGGTCAACGAGTAGCAATGGGAGAACAGTTCAGGTATTTTATGAATTTTCAAGAAAAATATGGAATTTAAACGCAACTTACCATTTCATCATCTCCACGATGAAAGTTATCCCCATGCCAGAAGCGTC

Function

GO:

id name namespace
GO:0006338 chromatin remodeling biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0043618 regulation of transcription from RNA polymerase II promoter in response to stress biological_process
GO:0042766 nucleosome mobilization biological_process
GO:0043044 ATP-dependent chromatin remodeling biological_process
GO:0006281 DNA repair biological_process
GO:0031011 Ino80 complex cellular_component
GO:0005634 nucleus cellular_component
GO:0042393 histone binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0003677 DNA binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0043138 3'-5' DNA helicase activity molecular_function
GO:0016887 ATPase activity molecular_function
GO:0004386 helicase activity molecular_function

KEGG:

id description
ko03036 Chromosome and associated proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036852 lncRNA downstream 33938 28233277 ~ 28233592 (-) True XLOC_018130
TCONS_00036851 lncRNA downstream 103378 28114764 ~ 28164152 (-) True XLOC_018129
TCONS_00036850 lncRNA downstream 103403 28114764 ~ 28164127 (-) False XLOC_018129
TCONS_00036849 lncRNA downstream 113034 28114764 ~ 28154496 (-) False XLOC_018129
TCONS_00035725 lncRNA downstream 963244 27303848 ~ 27304286 (-) False XLOC_018122
TCONS_00035738 lncRNA upstream 15539 28284780 ~ 28295104 (-) True XLOC_018131
TCONS_00036477 lncRNA upstream 369519 28638760 ~ 28641841 (-) True XLOC_018135
TCONS_00035758 lncRNA upstream 566128 28835369 ~ 28842490 (-) True XLOC_018139
TCONS_00036854 lncRNA upstream 591201 28860442 ~ 28863882 (-) True XLOC_018140
TCONS_00036478 lncRNA upstream 1157697 29426938 ~ 29429462 (-) True XLOC_018147
TCONS_00035734 mRNA downstream 402566 27822044 ~ 27864964 (-) True XLOC_018128
TCONS_00035733 mRNA downstream 409854 27822044 ~ 27857676 (-) False XLOC_018128
TCONS_00035732 mRNA downstream 533739 27732578 ~ 27733791 (-) True XLOC_018127
TCONS_00035731 mRNA downstream 555560 27707766 ~ 27711970 (-) True XLOC_018126
TCONS_00035730 mRNA downstream 877272 27384138 ~ 27390258 (-) True XLOC_018125
TCONS_00035737 mRNA upstream 362 28269603 ~ 28352352 (-) False XLOC_018131
TCONS_00035739 mRNA upstream 85028 28354269 ~ 28361574 (-) True XLOC_018132
TCONS_00035740 mRNA upstream 130352 28399593 ~ 28404443 (-) False XLOC_018133
TCONS_00035741 mRNA upstream 132298 28401539 ~ 28404362 (-) True XLOC_018133
TCONS_00035742 mRNA upstream 149243 28418484 ~ 28434078 (-) False XLOC_018134
TCONS_00035726 other downstream 955915 27308416 ~ 27311615 (-) True XLOC_018122
TCONS_00035722 other downstream 1041652 27224812 ~ 27225878 (-) True XLOC_018121
TCONS_00035715 other downstream 1213310 27054095 ~ 27054220 (-) True XLOC_018118
TCONS_00035701 other downstream 1678620 26584112 ~ 26588910 (-) True XLOC_018111
TCONS_00035698 other downstream 1716297 26550661 ~ 26551233 (-) True XLOC_018110
TCONS_00035747 other upstream 342031 28611272 ~ 28612322 (-) True XLOC_018136
TCONS_00035753 other upstream 563521 28832762 ~ 28842571 (-) False XLOC_018139
TCONS_00035760 other upstream 602644 28871885 ~ 28875874 (-) False XLOC_018141
TCONS_00035770 other upstream 777942 29047183 ~ 29050045 (-) True XLOC_018144
TCONS_00035788 other upstream 1226059 29495300 ~ 29495435 (-) True XLOC_018151