RNA id: TCONS_00035737


Basic Information

Item Value
RNA id TCONS_00035737
length 5814
RNA type mRNA
GC content 0.48
exon number 36
gene id XLOC_018131
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 28266327 ~ 28352352 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGCTGCAACAGAGACAGAGCGAAAACGGCGGACACGGGGGACAAGTGATCGCCCTCCGCCGGGCGCCAAACCTCTACCTATGGCCTCAGGGCAGGATGGCGTGGGAAACGCCACATGCTCAAAGTTGGCCAAACCACTTCACCTGCAGTACCTGGAGCGATCCCTCCGTCTAGACACCTTTCTTAGGCAGACTGCTACAGTTTTTAACCAGAACATTTCCAGCGATGACAGTGATGATGGTTTGGGCGAGGGGTCTTCTTTGGCCTCGTCTAACCCACTGCTGGCAGTGAAAAAAGATCACATCAGCCCTGAGGACGAGACCAAGGACTCCTGCAGAGATGGAGAGACGGAGTGTGGCACTCTTAATGGAGCTGTGCTACAAGAGCACAAAGCTGACAAGGCCAGCCTATATAACTTCTCCAGACTGAAGAAAAGTAGGAAATGGCTGAagGGCATCTTGCTGAGCGATGACACCACAGACTCAGACAGCGACTCGGATGATTCCGACTTCACAATGACACGGGAAGAGCTCCAGGACATGCTGCGCCTGCACAAGTTCACCAGACTCCACCAGAGCAAGTTTCACTCTGACAGAGAACTGCAGCACTATCAACACTACAGCACAGGCCTGCTGTCCACTCACGATCCTTTCTATGAGCAGCAGCGCCACCTACTGGGcctgaagaaaaagaaaatcaaggaGGAAAAGAAATGTAAGGCCAAGTTAAAAAAGatgaagaggaagaagaaacGAGGAGAGGAGTTTTCTATGGAAGGAAGGCAACACATTACTAAAACATTTGCCAAGTTTTCCCATGATGCACCACTTCCTATGATCAAAAAGAAGCACTTAACCATTGAGCAGCTAAACGCTCGTAGAAGAAAAGTCTGGCTTACAATTGCCAAAAAAGAAATCCCAAAGGCATTTAAACAAAAAGTCTCTGCAAGGAACTTTGTTTTAACCAATGCTAGAAAGTTGGCCCACCAGTGTATGCGTGAGGTCCGGAGGGCTGCCATCCAGGCACAGAAGAACTGCAAAGAGACTTTACCACGAGCTCGTCGCCTCACCAAAGAGATGCTGCTGTACTGGAAGAAGTACGAAAAGGTGGAAAAGGAGCACCGTAAACGTGCCGAGAAAGAGGCTCTCGAGCAACGCAAACTCGATGAGGAGATGCGGGAGGCTAAGCGTCAGCAGAGGAAGCTGAACTTTCTGATCACACAGACGGAGCTGTACGCTCACTTTATGGGTGGCAAGCAGAACGCTGGAGGAGACTGTACACAAGAGGAGATCCTGCGCAAGTTGGAGGACAATAGCTCCCAGCGGCAGATCGACATCGGTGGAGGAGTCATGGTCAACGTCAGCCAGGAGGACTATGATAGTGATTATTACAAGTCTCAGGCCCTGAAAAACGCAAAAGAGGCATACCAAATCCACCAGGCCAGAACCAGGTTGTTTGACGAGGAAGCGAAGGACAGTCGTTGTGCCTCTCTGCACGCTGCTAGTATGTCCGGCTCTGGCTTCGGTGAGAGCTACAGCTTATCAAACCCTTCTATTCAAGCAGGTGAAGACATCCCTCAACCCACCATCTTCAACGGCAAACTGAAGGGATACCAGCTCAAAGGCATGAACTGGCTGGCCAATCTTTATGAACAGGGCATCAATGGCATTCTGGCAGATGAAATGGGGCTTGGAAAGACAGTCCAGAGCATTGCTTTACTGGCTCATCTGGCAGAGAGGGAAAACATCTGGGGGCCGTTCCTGATCATCTCCCCAGCCTCAACACTCAACAACTGGCATCAGGAGTTCTCCCGCTTTGTGCCCAAATTCAAGGTGTTACCGTATTGGGGAAATCCTCATGATCGAAAGGTCATCCGAAAATTTTGGAGCCAGAAAACTCTGTATACTCAGAATGCACCATTCCATGTAGTCATCACCAGTTACCAGCTAGTGGTGCAGGATGTGAAGTATTTCCAGCGGGTGAAATGGCAGTATATGGTTCTGGATGAAGCTCAAGCACTGAAAAGCAGCACCAGCGTTCGGTGGAAGATCCTTCTTCAGTTCCAGTGCAGGAACCGCCTTCTGCTAACAGGGACGCCGATCCAGAACACAATGGCAGAGTTGTGGGCCTTGCTTCATTTCATCATGCCAACGCTGTTTGACTCTCACGAAGAGTTCAACGAGTGGTTCTCCAAGGACATCGAGAGTCATGCTGAGAACAAATCTGCTATTGATGAAAACCAACTTTCCCGATTACACATGATTCTAAAACCCTTTATGCTGCGCAGAATAAAGAAGGATGTGGAAAACGAACTCTCTGACAAGATTGAAATCTTGACATACTGCCAGCTGACCAGCAGACAGCGACTCCTTTACCAGGCTCTGAAGAACAAGATCTCTATCGAGGACCTTCTGCAGTCTTCAATGGGATCGGCCCAGCAGGCCCACAGCACCACCAGTAGCCTCATGAACCTCGTCATGCAGTTCAGGAAGGTTTGTAACCACCCAGACCTGTTTGAACGACAGGAGATACGCTCACCTTTCCACATGTCCCTAAAGCCCTTCATCATGTCCAAATTCCTCTTCCGACACGCAATCCTTCACACAATTGACCACGGAAAGACCAAGCTGAAACAGACGTTGCTCTCTCCGTTTTCTGCTCAACACATTCAACAGTCCTTATTTCACAGAAAAACTGACGATGAAGCCAGCAGCTTTTCCTTCCTGCGTTTCATCGACGTGTCTCCTGCCGAGATGTCAAATGTCATGCTTCAGGGGACTCTAGTGAGGTGGTTAGCCTTATATCTTTCTTTCAAATCAGCTTATCGGCTCCACCACAGCCGTCAGTGGGAAGAAGAAAAGATGAGCGAGGTTAAAGGGAGAGGCCGGTTAGAAAAGCTATGTCTTTCGCACAGGGATCTCATCTTATGGCTTAATCGGCCAACGTCTTTCCCAAATGTCCACAGCAGTCCTGTCCTACAGGATCTGGTGTTCACATCTACAGGGTCTTTATCCATCTGTCACACTGATGCAGTGATCCATAGCAGACGCTCATCCACTAGAACGCTCAGACAATGCCAACCTACCCAACCACCCAAGTTTTTACTCGCCGTTACACCCAGGGTGACTTCAGTACCCCTGGAACGCTACTGTGCAGATCGCAGCGCCGAGTATGAATGGAGGTTAATGCGTGACGGGGGGAGTCTCATTGCTAAGCAGTGCTTCCTGTACGGATCCCCCGAGCTGGCATGTGCTTGGGCTCAACGCTCTCAGTCTTTCCTCCCACCAAACCCAGGGGGCGTCATGGCCCTGCAGCAGAGGCACGGCTGGTCCTTTATAAGGATTCCAGACAAAGAGTCTCTGATCACAGACAGCGGGAAGCTTCACACTTTGGACTTGCTGCTGACTCGACTGAAGTCTCAGGGCCACCGAGTCCTCATCTACTCGCAGATGACCCGCATGATAGACCTTTTAGAGGAGTACATGGTGTACCGCAAGCACACATACATGAGACTGGATGGCTCGTCCAAGATTTCGGAGCGGCGGGACATGGTGGCTGACTTCCAGAGCCGGACGGATATCTTCGTCTTCCTCCTCAGTACCCGAGCCGGAGGCCTGGGGATCAACCTGACAGCTGCAGACACGGTGATCTTCTATGACAGCGACTGGAATCCTACTGTTGACCAGCAGGCCATGGATCGAGCTCACAGACTCGGACAAACCAAGCAGGTCACAGTCTATCGGCTCATTTGCAAAGGAACCATTGAGGAACGCATCCTACAGAGAGCCAAAGAAAAGAGTGAGATTCAGAGGATGGTGATATCAGGAGGAAATTTCAAACCCGATACCTTGAAGCCCAAAGAGGTGGTCAGCTTGCTGCTGGATGATGAGGAGCTTGAGAAGAAATTGCGTTTGCGGCAAGAAGAGAAAAGGCAGCTGGAGGAAAGCAGTAAGGTGAAAGAGAGGAAGAGGAAAAGAGAGAAATATGCAGAAAGGAAGAGGAAGGAGGACGACCCAGAGTCGAAGAGGAAGAAGGAAGGTGTGAATATGGTCATCCCTTATGTCCCGTCTGCAGACAACTCTAACCTTTCGGCAGATGGAGAAGACTCCTTTATCAGTGTGGACATGGACTCTGCCATACCTAGTCCTTTCAGTGAGATCTCATTGAGCAGCGAGCTTCAGCCCAGCTCCATTCCTGCAGACGAGAGCAGCAGCGACATGCTGGTAATTGTGGATGAACCTGTATCTTCTGCTCAACAGTCCCGTGCCACCAACTCTCCCGCCTCCATCGCCGGCTCTGTCTCAGATACCATGAATGGTGTCTCTTCTCAAGATATATCCAGTCCAGGCAGGGGAAGGTCTAACCGGAGTCGAGGACGACCTAAAGGCTCTGGAGGTGCTGGAAAATCATCTGTGAGGAAGGGAAGAGGAAGGAAGTCGACCGCGGGCAGTGCTGCAGCTATGGCGGGAGCGATGGCAGGAGCAGCAGCCGCTTCTGCAGCTGCGTATGCCGCATACGGCTACAGTGTGTCTAAAGGTATTCCAGCAAGCGGCTCCTTACCAACGGCTCTCATACGGTCTTCAACCACACCTACCTTTGTTCCAGCTGGCACCTCCTCACCGCAGGCTAAAAGCAGCGCTGTGGCCACCAACTCACAGACTTTAGCACATGGCAGTTCGCAAAGCCAACACAACCCTACTAAAAGAGGCAAAATCCCCAGCAACCACAGTGGACGGTAGCAGCCTGGGAATGTTTGTTTGCGTTCTGATTGTAGCATGGCCAGTATATTTTCAGTCCCATGTCGACGATTTTCTTGCTTATGATGTTGAGCCGCTATCAAACCACAAGCCCTAATGCCACTGTGAAACCCGACCTGATGCCCATCATGATTTTGCATTCTTTTATGGACTGGAGAGCAGAATGCGAGGTCACACTTTACTTAACAGCAAAAACAAGTCATTTTTTCCCTTGATAATTCAGAATCTGAGGTTTAGCTAAGTTTATGCAGAAATGGTGATGGAGTTCATTATTCCAgtgactgctttttttttttataaagttttcaaGACCATGCAAGGAGCAACAGGGCCATTCAGATCATTGTTATGAGCAGAGATGAGATGGTGACAAAGGAGGGATGTTGGTTATTGAACGCCCTCTTGAACAAAGTCtttacattttacacacatttgAAAAGATCTGTTATTTTTGTAGGACAAACTTGTTGACGTTTGTTCAATTCAAATACCGAATGGCCTTCTCTTTCTATGTTTATTTGCTGCAAATTCAAAGAGTTTGGCCTAaatactactatatatatatatatatatatatatattcattctctTGGGAAGAATAAAGAAATCAATGTGTTTTGTAGTAAAtgcaatggagaaaaaaaaaagtctgaagtGAGCGCTGCTCAAAAAACACGTCACTGCTCAGATTTGTGACTTAAAAACTTGGATATGAAATGTATTATAGCTTAAGTTAAGACTTGGTAATTTATGATCTGTGCTGGGTGTAAATTGTATCAaagcggtttttatttttaaataacaatgaAAAGTTCATGATTTGTTGCATATAGTTATGGTTTTTGAAGGCCATTTCTGGgttcattttgtctttaaacgTGATGATGTTATATGTATGTAAATACTTAAAGGGTTTCGTCCCTTTCAAAGTTCTCCCATTTTCCCTCAATTGCTTGTCTATTTTTATAGGTCAGTGTACATACCTGAAGAAATGCCCAAATGATTCTTTTACTAACTTGGGGGGACAAAAGccctaaataaacattaattcaaTGATT

Function

GO:

id name namespace
GO:0006338 chromatin remodeling biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0043618 regulation of transcription from RNA polymerase II promoter in response to stress biological_process
GO:0042766 nucleosome mobilization biological_process
GO:0043044 ATP-dependent chromatin remodeling biological_process
GO:0006281 DNA repair biological_process
GO:0031011 Ino80 complex cellular_component
GO:0005634 nucleus cellular_component
GO:0042393 histone binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0003677 DNA binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0043138 3'-5' DNA helicase activity molecular_function
GO:0016887 ATPase activity molecular_function
GO:0004386 helicase activity molecular_function

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-041014-72 Predicted to enable ATP hydrolysis activity and histone binding activity. Predicted to be involved in DNA repair; chromatin remodeling; and regulation of transcription from RNA polymerase II promoter in response to stress. Predicted to act upstream of or within cellular response to DNA damage stimulus; chromatin remodeling; and transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of Ino80 complex. Orthologous to human INO80 (INO80 complex ATPase subunit).

Ensembl:

ensembl_id ENSDART00000128806

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036853 lncRNA downstream 362 28267530 ~ 28269241 (-) False XLOC_018131
TCONS_00036852 lncRNA downstream 36011 28233277 ~ 28233592 (-) True XLOC_018130
TCONS_00036851 lncRNA downstream 105451 28114764 ~ 28164152 (-) True XLOC_018129
TCONS_00036850 lncRNA downstream 105476 28114764 ~ 28164127 (-) False XLOC_018129
TCONS_00036849 lncRNA downstream 115107 28114764 ~ 28154496 (-) False XLOC_018129
TCONS_00036477 lncRNA upstream 286408 28638760 ~ 28641841 (-) True XLOC_018135
TCONS_00035758 lncRNA upstream 483017 28835369 ~ 28842490 (-) True XLOC_018139
TCONS_00036854 lncRNA upstream 508090 28860442 ~ 28863882 (-) True XLOC_018140
TCONS_00036478 lncRNA upstream 1074586 29426938 ~ 29429462 (-) True XLOC_018147
TCONS_00035778 lncRNA upstream 1121235 29473587 ~ 29474495 (-) True XLOC_018148
TCONS_00035734 mRNA downstream 404639 27822044 ~ 27864964 (-) True XLOC_018128
TCONS_00035733 mRNA downstream 411927 27822044 ~ 27857676 (-) False XLOC_018128
TCONS_00035732 mRNA downstream 535812 27732578 ~ 27733791 (-) True XLOC_018127
TCONS_00035731 mRNA downstream 557633 27707766 ~ 27711970 (-) True XLOC_018126
TCONS_00035730 mRNA downstream 879345 27384138 ~ 27390258 (-) True XLOC_018125
TCONS_00035739 mRNA upstream 1917 28354269 ~ 28361574 (-) True XLOC_018132
TCONS_00035740 mRNA upstream 47241 28399593 ~ 28404443 (-) False XLOC_018133
TCONS_00035741 mRNA upstream 49187 28401539 ~ 28404362 (-) True XLOC_018133
TCONS_00035742 mRNA upstream 66132 28418484 ~ 28434078 (-) False XLOC_018134
TCONS_00035743 mRNA upstream 70193 28422545 ~ 28433616 (-) False XLOC_018134
TCONS_00035726 other downstream 957988 27308416 ~ 27311615 (-) True XLOC_018122
TCONS_00035722 other downstream 1043725 27224812 ~ 27225878 (-) True XLOC_018121
TCONS_00035715 other downstream 1215383 27054095 ~ 27054220 (-) True XLOC_018118
TCONS_00035701 other downstream 1680693 26584112 ~ 26588910 (-) True XLOC_018111
TCONS_00035698 other downstream 1718370 26550661 ~ 26551233 (-) True XLOC_018110
TCONS_00035747 other upstream 258920 28611272 ~ 28612322 (-) True XLOC_018136
TCONS_00035753 other upstream 480410 28832762 ~ 28842571 (-) False XLOC_018139
TCONS_00035760 other upstream 519533 28871885 ~ 28875874 (-) False XLOC_018141
TCONS_00035770 other upstream 694831 29047183 ~ 29050045 (-) True XLOC_018144
TCONS_00035788 other upstream 1142948 29495300 ~ 29495435 (-) True XLOC_018151

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000325_06279333_06313435.mRNA True 6459 mRNA 0.48 37 CI01000325 6278234 ~ 6313506 (-)
bowfin (Amia calva) AMCG00000221 True 4777 mRNA 0.54 37 CM030141.1 7702819 ~ 7740807 (+)