RNA id: TCONS_00035731


Basic Information

Item Value
RNA id TCONS_00035731
length 1639
RNA type mRNA
GC content 0.53
exon number 3
gene id XLOC_018126
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 27707766 ~ 27711970 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTAGACAGAAATTAACAAAAAACGAGCACATAAATACAAGCCGGGCGCCTGCTTTGTATGTTTTCACTATGCGTTCGTCTGGATCAGCTAATGTACAGTACGGTCACGTGACGGATAACAAGCTAAGCCGTCAATCGCATAGGAAGAAGCGCGAGACCATAAGAGAATTTTCCTGCTGCAACAAACACGAAATTATTCCCCCTTTCTCTCGTGTAGTTGGTTGAGATGGACGTGTCTGGCCACAGTCTGTTCCTCCTGCAGCAGCTGAACGTCCAAAGGGAGTTTGGCTTTCTGTGTGACTGCACTGTTGCCATTGGCAACGTATACTTCAAGGCTCATCGTGCAGTCCTCGCCGCCTTCTCAAACTACTTCAAAATGATCTTTATCCACCAGTCCAGTGAGTGCATCAAGATCCAGCCCACAGATATTCAACCTGATGTCTTCAGCTATCTGCTACACATCATGTACACAGGTATGGGTCCTAAACAACCTGTAGACCAGGGCAGACTTCAGGAAGGCATCAAGTTCCTCCATGCGTACCAGCTCTGCCGTAAAGCAGGCGAGAGTGGTCCTGATGCATCCTCTGATGCCATCCGTATGTCCAATCTGTATGGCATCCAGATCTCTTCCCAGCTGGCCAACAAAGAAAACTCGGGCCTGAAGGCTGGTGGCTCACGGGACCCTGAGGACGGGCGTTCCAGCACACGGGCCGATCGCACACATGGCCGTTTAGCACTCGCTGTAGGGCTGGAGGGCATTGCATCTGAGCAACACCCTCAAAGCTTTCATGCCGCGTCTTCGGTGGCCTCGGGGGACGACTCTGACATTTCTGCACGGATCAAACAGGAACGGGTAGAAGAGGAAGAACAACAGGAAGGAGACAAAGAGTCTTCAGCTCTTTCCCCAGCCCAGGTGAGCCCCTGTCAAGCGGGTCTATTCAGAGATGGCCCTCTGGCACTTTTGTGCCCTCGATGTGGGGAACGCTGTTTGTCACCTGAAGGCTTACAAGAGCACCTTTTTACCCACGCAGCCTGCGCCCTCGAGTCTAGCACACTGATGGAAGGCCCGTCAGAGGACAAAAGCGGGGAACACGCATCCTTGGAGGAAAGGCGGCCTCTTAAGGAGCCTATAGACTCTGGTAGTCTGGAGGAGGCTCTACGGCAGAGTCAAGCCCTGGCTGATGAGCTGGCTGTTGAACTCAGGCGAGGTGGTGGGACTGGGAGGAGCGCTAGCCCATTGGCAGCCTTCACGCGAAAGAGAAAGATGGCCTGTGCTGTCTGCAACCTCCGTTTCTCTCAGAAAAGCCAGCTGCAGGAGCACATGTTTGCCCATGTGGGAAAGCCTCTGCGATATCATCGCTACAGCCGTTTCTGCGGGCAGCTGCTTCACGGCTGCGAGGGCCAGCCAGATATTACCACAGCCACGGGAGACGAGGCAGCCAAGGACACTCAGGATAACGGCAGCTCCTGCTACTCTCTGGACTCTGAGATCTCTCAGGAGAGCGTAGATGCAGTGACTGTGGAATGACAGTGTTTGACGTATGCAAACACACAAGGCCTGCTAAAGGAATATTCTGGGTTCAGTACAAAATAAGCTCAGCTGACTGCATTTAGtggcataatgttttttttcccacaaa

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005654 nucleoplasm cellular_component
GO:0001227 DNA-binding transcription repressor activity, RNA polymerase II-specific molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function

KEGG:

id description
ko03000 Transcription factors
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-041001-125 Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleoplasm. Orthologous to human ZBTB25 (zinc finger and BTB domain containing 25).

Ensembl:

ensembl_id ENSDART00000139637

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00035725 lncRNA downstream 403480 27303848 ~ 27304286 (-) False XLOC_018122
TCONS_00035713 lncRNA downstream 745010 26959533 ~ 26962756 (-) True XLOC_018116
TCONS_00036848 lncRNA downstream 771995 26932068 ~ 26935771 (-) False XLOC_018115
TCONS_00035712 lncRNA downstream 771995 26935002 ~ 26935771 (-) True XLOC_018115
TCONS_00036847 lncRNA downstream 999240 26631070 ~ 26708526 (-) True XLOC_018112
TCONS_00036849 lncRNA upstream 402794 28114764 ~ 28154496 (-) False XLOC_018129
TCONS_00036850 lncRNA upstream 402794 28114764 ~ 28164127 (-) False XLOC_018129
TCONS_00036851 lncRNA upstream 402794 28114764 ~ 28164152 (-) True XLOC_018129
TCONS_00036852 lncRNA upstream 521307 28233277 ~ 28233592 (-) True XLOC_018130
TCONS_00036853 lncRNA upstream 555560 28267530 ~ 28269241 (-) False XLOC_018131
TCONS_00035730 mRNA downstream 317508 27384138 ~ 27390258 (-) True XLOC_018125
TCONS_00035729 mRNA downstream 326075 27371394 ~ 27381691 (-) True XLOC_018124
TCONS_00035728 mRNA downstream 377383 27324565 ~ 27330383 (-) True XLOC_018123
TCONS_00035727 mRNA downstream 382508 27316678 ~ 27325258 (-) False XLOC_018123
TCONS_00035723 mRNA downstream 396091 27295701 ~ 27311675 (-) False XLOC_018122
TCONS_00035732 mRNA upstream 20608 27732578 ~ 27733791 (-) True XLOC_018127
TCONS_00035733 mRNA upstream 110074 27822044 ~ 27857676 (-) False XLOC_018128
TCONS_00035734 mRNA upstream 110074 27822044 ~ 27864964 (-) True XLOC_018128
TCONS_00035736 mRNA upstream 554357 28266327 ~ 28349144 (-) False XLOC_018131
TCONS_00035735 mRNA upstream 554357 28266327 ~ 28349144 (-) False XLOC_018131
TCONS_00035726 other downstream 396151 27308416 ~ 27311615 (-) True XLOC_018122
TCONS_00035722 other downstream 481888 27224812 ~ 27225878 (-) True XLOC_018121
TCONS_00035715 other downstream 653546 27054095 ~ 27054220 (-) True XLOC_018118
TCONS_00035701 other downstream 1118856 26584112 ~ 26588910 (-) True XLOC_018111
TCONS_00035698 other downstream 1156533 26550661 ~ 26551233 (-) True XLOC_018110
TCONS_00035747 other upstream 899302 28611272 ~ 28612322 (-) True XLOC_018136
TCONS_00035753 other upstream 1120792 28832762 ~ 28842571 (-) False XLOC_018139
TCONS_00035760 other upstream 1159915 28871885 ~ 28875874 (-) False XLOC_018141
TCONS_00035770 other upstream 1335213 29047183 ~ 29050045 (-) True XLOC_018144
TCONS_00035788 other upstream 1783330 29495300 ~ 29495435 (-) True XLOC_018151

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000325_05968651_05972436.mRNA True 3722 mRNA 0.44 4 CI01000325 5966988 ~ 5972833 (-)