RNA id: TCONS_00035727


Basic Information

Item Value
RNA id TCONS_00035727
length 2447
RNA type mRNA
GC content 0.42
exon number 10
gene id XLOC_018123
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 27316678 ~ 27330383 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGCAATTGCTGTAGAGAGGAAGAAGCAGACACGCATGCAACACATTCAGCCTAACTGTTGATATCCTGCAGAAGGTGCAAAATGGCAGCAGCCAGAGTGACAATGGCAGCATCAAGGACAACAAGCAGAGAGCTGGAGGACTACAGTGCTTATGCACATATGTCAGAAGAACAGCTGTTGCAGTTAGCTATTGAACGTAGCCTGGCTGAAACAAATTTATCTCCATGGCAAGATCGGCAAGTGCAGGCCCACACACAGCCAGCTGTCCCTAAAGGTGCACAAAGACCTCCAGCCAACCCTAATTCAGCCAACCCACCAAGTGAAATTAAGAAAACAAAGATCGACAGAGATGTTCAAGATCATATTTTTAGTAAAGACAGTGACAAGGTAATTGCATGGACAAGACACAATGGACACCTGCGGGTCACAGTGCAAACTGTAAATGATTTGGACCCCTTTCTCTCAGCTATTTGGAAGGGAGATGCAAAGACTTTACAAGACCTCGTTCATAGCAAATCTAAATATCTCGAAGAGCCCAATAAAGATGGCTGGTTACCGCTTCATGAATGTGCCTGCAACGGCCATGTGGAGTGCCTTAAGGTTTTGCTCAAAGCCAAACCAGATACAATCAACAAAAGAACACACAGAAATCAGACCCCGCTCATTCTGGCTGTGGGTCGCAAGCATGTTGCTTGTGTCGAGCACCTTTTGGAGCAAGGAGCTGATCCAAACATTGCGAATAACCAGTGGGAGACCCCATTGTACAAAGCATGTGAGAAAGGTAATGAAGAGATAGTGGAACTTCTATTGAGATATGGAGCTACACCAACCAAAGCCTGCGTTCAAGGTTTAACTCCACTACATGAAGCAGTGAGGAACAAAATGTTGGAGAGTTGTAAGATGTTGATACACGCAGGGGCAAAGCTGTGGGCCCAAAATGTTTATGGGATTGACTCTTTGTTTACAGCTGCTCAGTGTAACGCTGTCGATGTGCTAAACTACCTTATACATAAagGAGGTAATATCAATTCCAAGGCTAATGATGATGCAACAGCCTTGTTTGAGGCCTCCAAGAATGGTCATGTTCAAGTTGTCAAGATCCTCCTGTCAAAAAGAGCCGATGCTAACAAAGCCAACAAATCTGGATTGCTTCCTATTCACATCGCATCAAAGAATGGCCATGAGAGCATTGTCGCCATGTTAATTCCTAAAACCAGCACAACCAAAGTGAGACGCTCCGGCATCAGTCCCCTTCATTTCGCAGCTGAGCGTAACAGAGATGACGTTCTAGAAATACTGATTGAGGCTGGATATGATGTCAATGCCATGCTCTCAGACGACTGGTCAAAACTGCATGAGGATCGCCGCAGCACAGCTTTATACTCGGCTGTGGTGAACAGAAACATTGAGGCCGCCATTATGCTTTTAGAAGCTGGTGCTGACCCAAACCTGGACATATTCAACCCTCTGCTTGTGGCTGTGAGGAAAGGAAATATAGAAATGGTGACCCTGTTGGTGAAGTACGGTGCCAATGTTAATGCCATGCTGCCCACTCATCCCACCAGCTTCCCAGCAGCTCTGGTTTTCTGCATGAGGTACATTATGATGATGAAGTATCTTCTGGACAATGGCTGTGATGCACTGGCATGTTTTAAATGTCAGTATGGAAGTAATCCTCATCCCCCTTTAAAACCAAGATCAACTGGAAGAGAAACAATGTACTTATTAAATGAAGATCCATCAGACTACTGTGTACagttttgtgAGATAATCTCTGCTCCCTCAGTCAGTGGTTTGGTTGGACCCATTATTGACACTTTACTTAACTACGTGGGTCACGTTAAACTCTGCTCTAGATTAACCGAACACCTAGACAACAACAAAGACTGGGCTCATGTAAAAGAAAAAGCAGTTCTTCCATGCACATTGATGAATCTGTGCAGAATAAAGGTTCGCCAACAACTCGGAGTCCACAGACTGCAGCAAATCCACACTCTTCCTCTACCAGCAAGACTAAACAAGTTCTTGATTTATGAACGAGAATCATTTGAGGGAATCCTGTCATAAAATTCTGTGCCATTTTTCAATATTTACAAAACATGTTGTCTTGAATTCTTTTGGTACAGACATACAGTTAGTTATAACAAATTTAAACgatgaattaaatgtttaaaatcaaaTTTGAAAATGAAACGTTTACTATTTTCAATTTGCATAgctaattattttaattcatgcgtgtaaatgtaaataacatattaaatgtatatagtatacatactgtataaaatgtCAAAAGAGGCACACAATTTGATATAAATCAAGTGCTGGCTATGTATTTTTACTTGCATAAACAAATGTACTGTACTTGCACTTTaagattttttgtaaataataattggattcaacaataattaaaaatttcGGGTATTAAAACTGCAATGAGC

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0016567 protein ubiquitination biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0000151 ubiquitin ligase complex cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5355 Predicted to be involved in protein ubiquitination and ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within intracellular signal transduction. Predicted to be part of ubiquitin ligase complex. Orthologous to human ASB2 (ankyrin repeat and SOCS box containing 2).

Ensembl:

ensembl_id ENSDART00000152917

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00035725 lncRNA downstream 12392 27303848 ~ 27304286 (-) False XLOC_018122
TCONS_00035713 lncRNA downstream 353922 26959533 ~ 26962756 (-) True XLOC_018116
TCONS_00036848 lncRNA downstream 380907 26932068 ~ 26935771 (-) False XLOC_018115
TCONS_00035712 lncRNA downstream 380907 26935002 ~ 26935771 (-) True XLOC_018115
TCONS_00036847 lncRNA downstream 608152 26631070 ~ 26708526 (-) True XLOC_018112
TCONS_00036849 lncRNA upstream 789506 28114764 ~ 28154496 (-) False XLOC_018129
TCONS_00036850 lncRNA upstream 789506 28114764 ~ 28164127 (-) False XLOC_018129
TCONS_00036851 lncRNA upstream 789506 28114764 ~ 28164152 (-) True XLOC_018129
TCONS_00036852 lncRNA upstream 908019 28233277 ~ 28233592 (-) True XLOC_018130
TCONS_00036853 lncRNA upstream 942272 28267530 ~ 28269241 (-) False XLOC_018131
TCONS_00035723 mRNA downstream 5003 27295701 ~ 27311675 (-) False XLOC_018122
TCONS_00035724 mRNA downstream 5003 27297032 ~ 27311675 (-) False XLOC_018122
TCONS_00035720 mRNA downstream 90800 27223421 ~ 27225878 (-) False XLOC_018121
TCONS_00035719 mRNA downstream 90802 27222849 ~ 27225876 (-) False XLOC_018121
TCONS_00035721 mRNA downstream 91614 27224046 ~ 27225064 (-) False XLOC_018121
TCONS_00035729 mRNA upstream 46136 27371394 ~ 27381691 (-) True XLOC_018124
TCONS_00035730 mRNA upstream 58880 27384138 ~ 27390258 (-) True XLOC_018125
TCONS_00035731 mRNA upstream 382508 27707766 ~ 27711970 (-) True XLOC_018126
TCONS_00035732 mRNA upstream 407320 27732578 ~ 27733791 (-) True XLOC_018127
TCONS_00035733 mRNA upstream 496786 27822044 ~ 27857676 (-) False XLOC_018128
TCONS_00035726 other downstream 5063 27308416 ~ 27311615 (-) True XLOC_018122
TCONS_00035722 other downstream 90800 27224812 ~ 27225878 (-) True XLOC_018121
TCONS_00035715 other downstream 262458 27054095 ~ 27054220 (-) True XLOC_018118
TCONS_00035701 other downstream 727768 26584112 ~ 26588910 (-) True XLOC_018111
TCONS_00035698 other downstream 765445 26550661 ~ 26551233 (-) True XLOC_018110
TCONS_00035747 other upstream 1286014 28611272 ~ 28612322 (-) True XLOC_018136
TCONS_00035753 other upstream 1507504 28832762 ~ 28842571 (-) False XLOC_018139
TCONS_00035760 other upstream 1546627 28871885 ~ 28875874 (-) False XLOC_018141
TCONS_00035770 other upstream 1721925 29047183 ~ 29050045 (-) True XLOC_018144
TCONS_00035788 other upstream 2170042 29495300 ~ 29495435 (-) True XLOC_018151

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000325_05746064_05750106.mRNA True 1671 mRNA 0.44 7 CI01000325 5746064 ~ 5750106 (-)