RNA id: TCONS_00035730


Basic Information

Item Value
RNA id TCONS_00035730
length 1957
RNA type mRNA
GC content 0.44
exon number 3
gene id XLOC_018125
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 27384138 ~ 27390258 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AtcatcctgaaataaaatgagttTTACGACCAGACATAAAAAATTACAGCGGATACGGTAAACTCGACACTTTCCGTTGACAATGGCCgtcttaaaagtgacatttacgAAGACCAATAGAGACAAACTGGCCCAGGTTTTATGGGTTTTGAACTGGGTGTCTGTGGTGACTGGAGTGACGCTCTTCAGCATGGGCTTGTTCTTAAAGGTGGAGATTGAGAAGAGGCGGGAGCTGATGTCAAAAGAGATCGACTCGGTGCCAAACATGCTTATCTGTGTTGGCCTGACTGCATGTGCGATCAACTTTTTGGGGGGAAAGATCTGCTATGACTGTGTGGATACAACCAAGTTCCTGCGATGGAAGCTGCTGATGCTGCCTTACATCACATGTACCTTTTTCTTTACGTTCTGCATCCTCGTGGGTGCCCTGATGTGCTACAGCATGCGCAAAGACCTGGAGGAGTCCCTGTATTTTGGTTTGCGAGATGCCATGCGCTACTATAAAGACACTGACATGCCGGGACGCTGCTATATTAAGCGCACTATGGACATGCTGCAGATGCAGTTTCAGTGTTGCGGTAACGGAGGTTACAGAGACTGGTTTCACATTCAGTGGATCAGTAACCGCTACCTGAATCTCAGCAACAGTGATGTTGTGGAGCGGATTCGGAGCAATGTGGAAGGGAAGTATCTGATAGACGGGGTGCCGTTCAGTTGCTGTGGCCTATATTCACCCCGGCCCTGCATTCAGCATCAAATCACCAACAACTCAGCGCACTATAATTACGACTACTTGAAGGAGGATCTGAACCTGAACCGACGAGGCTGCCTACAGGCCCTGCTGGAGCACTACACACAGATCATGCAGTCCATCGGGTTAATCGTTCTCATCATTTGGCTTTTTGAGGTGTCTGTGCTGACAGGAGTGCGTTATCTTCAGACAGCCATGGAGAACGTGCTGAGGCAGGGAGACCCTGACTGTGAGTCTGACGGCTGGCTTCTGGAGAACAGCATTGCAGACACTGCACGCTATAACTTCAACATCATTAAGAACCTGGGCAAGTGCTACCAGGTGGATGACGATCCCAACATAGACGTACCGAGCACCAGCCGGCAAATGCAAGAGAACGTGCCCGTAAAGCAAATCCCTGAGGCCAGGTAGTAAAAGAGACACTGAGACTTACCCAAGCCATTCCACAATGGCAGCCTTGGAGAGGCAGATCAAGCTCTGCATTGCAGCCTTTGACCATTTACTTGAATCGCACAAAGCGCAAAGGAGGTGAAGAATGACCTGGAACATAAAAACAGGCTGATAAAGGAGATCTCAATTGAAAGGCACTCATTGCAATGTAATCCTTGTGCCATACAAAAGGAAGAgaatgaaatatgcatttttagaaGCTGAAGGAAAAGCGACAGAcagatatttacaatatttaatcaatcaatgtcaaatttacttggatttacacttgtgaaatggagtaAATTCATTCAACTGACATGAATAAGTTAATAACAGCGGCTATAAACAAAGATGGTAATGGATGACAAGCTTTCGCGTGCCTCTACCCTGTAATGAAGATTATTTTGTCCATCTTAATATTATCTGAATGATAAACACATTTCAAATTAATCTGAAAAGGGTTTGATTATAGGCCTTTGTTCCATTACTAAAGAGGTATTACCATGTGTTAAGCATAAAATGCCTTTTGGGATCCAGCAAGGatctttttctctctcactcaGTTGCTTCATTTGTTTCGTCGTAGGTCTATATTTAGTTTCTCTGCTAGTCAATCATACATCTATTGCTTTGGAGAATTTCTGCATCTGAAAAGGATGAATTTTGGCTTAGGCACATTTTTTCAGACAATTAATCAGTACAAACATTGACTTCTGAGCTGCAGCACTGTGTTTAATATACTTTGAGTCTACACTGTCTGTTTTAAACCCA

Function

GO:

id name namespace
GO:0007601 visual perception biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-041001-147 Predicted to act upstream of or within visual perception. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane.

Ensembl:

ensembl_id ENSDART00000010584

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00035725 lncRNA downstream 79852 27303848 ~ 27304286 (-) False XLOC_018122
TCONS_00035713 lncRNA downstream 421382 26959533 ~ 26962756 (-) True XLOC_018116
TCONS_00036848 lncRNA downstream 448367 26932068 ~ 26935771 (-) False XLOC_018115
TCONS_00035712 lncRNA downstream 448367 26935002 ~ 26935771 (-) True XLOC_018115
TCONS_00036847 lncRNA downstream 675612 26631070 ~ 26708526 (-) True XLOC_018112
TCONS_00036849 lncRNA upstream 724506 28114764 ~ 28154496 (-) False XLOC_018129
TCONS_00036850 lncRNA upstream 724506 28114764 ~ 28164127 (-) False XLOC_018129
TCONS_00036851 lncRNA upstream 724506 28114764 ~ 28164152 (-) True XLOC_018129
TCONS_00036852 lncRNA upstream 843019 28233277 ~ 28233592 (-) True XLOC_018130
TCONS_00036853 lncRNA upstream 877272 28267530 ~ 28269241 (-) False XLOC_018131
TCONS_00035729 mRNA downstream 2447 27371394 ~ 27381691 (-) True XLOC_018124
TCONS_00035728 mRNA downstream 53755 27324565 ~ 27330383 (-) True XLOC_018123
TCONS_00035727 mRNA downstream 58880 27316678 ~ 27325258 (-) False XLOC_018123
TCONS_00035723 mRNA downstream 72463 27295701 ~ 27311675 (-) False XLOC_018122
TCONS_00035724 mRNA downstream 72463 27297032 ~ 27311675 (-) False XLOC_018122
TCONS_00035731 mRNA upstream 317508 27707766 ~ 27711970 (-) True XLOC_018126
TCONS_00035732 mRNA upstream 342320 27732578 ~ 27733791 (-) True XLOC_018127
TCONS_00035733 mRNA upstream 431786 27822044 ~ 27857676 (-) False XLOC_018128
TCONS_00035734 mRNA upstream 431786 27822044 ~ 27864964 (-) True XLOC_018128
TCONS_00035736 mRNA upstream 876069 28266327 ~ 28349144 (-) False XLOC_018131
TCONS_00035726 other downstream 72523 27308416 ~ 27311615 (-) True XLOC_018122
TCONS_00035722 other downstream 158260 27224812 ~ 27225878 (-) True XLOC_018121
TCONS_00035715 other downstream 329918 27054095 ~ 27054220 (-) True XLOC_018118
TCONS_00035701 other downstream 795228 26584112 ~ 26588910 (-) True XLOC_018111
TCONS_00035698 other downstream 832905 26550661 ~ 26551233 (-) True XLOC_018110
TCONS_00035747 other upstream 1221014 28611272 ~ 28612322 (-) True XLOC_018136
TCONS_00035753 other upstream 1442504 28832762 ~ 28842571 (-) False XLOC_018139
TCONS_00035760 other upstream 1481627 28871885 ~ 28875874 (-) False XLOC_018141
TCONS_00035770 other upstream 1656925 29047183 ~ 29050045 (-) True XLOC_018144
TCONS_00035788 other upstream 2105042 29495300 ~ 29495435 (-) True XLOC_018151

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000325_05787773_05791837.mRNA False 1322 mRNA 0.47 4 CI01000325 5787603 ~ 5791837 (-)