RNA id: TCONS_00036851


Basic Information

Item Value
RNA id TCONS_00036851
length 1224
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id XLOC_018129
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 28114764 ~ 28164152 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGCAGAAACAGAATCCAGAGGGAGATCAGAGGGCGCAGCTCTACTCTACTGCTGACTCACGCTGTGTGCCAAGTTTCCCCTGCTGAGCTGCACAGCTTCACTTCTTCGCTGTCTGCGCTGATCTGGAGCTCTAGCTGAAGTTAAAAGTGCaaaaatTGATGAAGTGGATTTCACAGGGCCCTACATATTCACCAATGCTCAGGTCACAACCTTTAAATGAGCGAATTTGGAGTTTCAACTGTCACCGCTGCTTTTTCAACACCAAAACAATGTAAACAGTGAGTGGAGGACGTCGATGGACAGATGCAATAAGCAAGCAAGAGCAACCCTTTGATGTCTGCTGATTTCCATACATCATCTCCAAAATCAACAAAGATCAGTCCCATGGCAAGTTGAGAGGGAATAAGAGCTGTGATTAGCTCAGTCCTCACACGGCTGCTTCAGTAAAGACTCTATCTTCATCCCTCCTCAAATGGCCACCATTATCTCAACCCAATCAGTGTCTCAGTTGTGAACGACCAGCGTTTTTCTTTACTGATGGGACTTGTTCTGGGGAGACCTGACTACACGGAAACATGACCTCCTCTCTCTCCCACATACCCCCATGGGACCACCATTTCAGTTGCTGAAATATTCATGCGGTCGAGGAACATGCTGTAAGAGCTCAGGTCTTTAAAGTCATTAGACAAGAGAAAGTGAGTACAGAGGATACTCCCATGCTGAAAGACTGCATGAATGGACCTTAGTGATAATTCACTAGACATTTGCAGTTTAACTTCTTACGCTCAGTTGAGAATATTTCTTTCCCTCAATAGaatattaaaaaagatttttagctgaaatcatAGTCTTTGCTGAAtcataaaatgcaaatcaatggCCACTAGGACTTGGAGAGTCTAACAATCATATataatcaacacacacacacgcatgcacgcacacacacacacaaaatatacagTCATTCTGAAGTTGAACATTATGTTTGTTTGGATATATATGGACTTTATAAATCACTATGGACCACACTTTCAGCTAAAATCTTCTATGAAGGCCCAAACGTAAACAGCATTGACAGTAATGGAAAATCCTCATAGATCTCATATCAATATGGATTTCAGTGTGCCTTTCTCGTTCGCATCGGATTTCTCCGGGTCAGGTGCTTTgatttcctccacaagtccaaagatatgcaatacaggtgaactaggtaagctaaaa

Function

GO:

id name namespace
GO:0000003 reproduction biological_process
GO:0022402 cell cycle process biological_process
GO:0098813 nuclear chromosome segregation biological_process
GO:1902850 microtubule cytoskeleton organization involved in mitosis biological_process
GO:0022414 reproductive process biological_process
GO:0051726 regulation of cell cycle biological_process
GO:0090307 mitotic spindle assembly biological_process
GO:0140014 mitotic nuclear division biological_process
GO:0007281 germ cell development biological_process
GO:0048285 organelle fission biological_process
GO:0007049 cell cycle biological_process
GO:0007051 spindle organization biological_process
GO:0007052 mitotic spindle organization biological_process
GO:0007059 chromosome segregation biological_process
GO:0051301 cell division biological_process
GO:1903047 mitotic cell cycle process biological_process
GO:0000278 mitotic cell cycle biological_process
GO:0000280 nuclear division biological_process
GO:0072686 mitotic spindle cellular_component
GO:0044430 obsolete cytoskeletal part cellular_component
GO:0005813 centrosome cellular_component
GO:0005815 microtubule organizing center cellular_component
GO:0005819 spindle cellular_component
GO:0015630 microtubule cytoskeleton cellular_component
GO:0005634 nucleus cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00035725 lncRNA downstream 810478 27303848 ~ 27304286 (-) False XLOC_018122
TCONS_00035713 lncRNA downstream 1152008 26959533 ~ 26962756 (-) True XLOC_018116
TCONS_00036848 lncRNA downstream 1178993 26932068 ~ 26935771 (-) False XLOC_018115
TCONS_00035712 lncRNA downstream 1178993 26935002 ~ 26935771 (-) True XLOC_018115
TCONS_00036847 lncRNA downstream 1406238 26631070 ~ 26708526 (-) True XLOC_018112
TCONS_00036852 lncRNA upstream 69125 28233277 ~ 28233592 (-) True XLOC_018130
TCONS_00036853 lncRNA upstream 103378 28267530 ~ 28269241 (-) False XLOC_018131
TCONS_00035738 lncRNA upstream 120628 28284780 ~ 28295104 (-) True XLOC_018131
TCONS_00036477 lncRNA upstream 474608 28638760 ~ 28641841 (-) True XLOC_018135
TCONS_00035758 lncRNA upstream 671217 28835369 ~ 28842490 (-) True XLOC_018139
TCONS_00035734 mRNA downstream 249800 27822044 ~ 27864964 (-) True XLOC_018128
TCONS_00035733 mRNA downstream 257088 27822044 ~ 27857676 (-) False XLOC_018128
TCONS_00035732 mRNA downstream 380973 27732578 ~ 27733791 (-) True XLOC_018127
TCONS_00035731 mRNA downstream 402794 27707766 ~ 27711970 (-) True XLOC_018126
TCONS_00035730 mRNA downstream 724506 27384138 ~ 27390258 (-) True XLOC_018125
TCONS_00035736 mRNA upstream 102175 28266327 ~ 28349144 (-) False XLOC_018131
TCONS_00035735 mRNA upstream 102175 28266327 ~ 28349144 (-) False XLOC_018131
TCONS_00035737 mRNA upstream 105451 28269603 ~ 28352352 (-) False XLOC_018131
TCONS_00035739 mRNA upstream 190117 28354269 ~ 28361574 (-) True XLOC_018132
TCONS_00035740 mRNA upstream 235441 28399593 ~ 28404443 (-) False XLOC_018133
TCONS_00035726 other downstream 803149 27308416 ~ 27311615 (-) True XLOC_018122
TCONS_00035722 other downstream 888886 27224812 ~ 27225878 (-) True XLOC_018121
TCONS_00035715 other downstream 1060544 27054095 ~ 27054220 (-) True XLOC_018118
TCONS_00035701 other downstream 1525854 26584112 ~ 26588910 (-) True XLOC_018111
TCONS_00035698 other downstream 1563531 26550661 ~ 26551233 (-) True XLOC_018110
TCONS_00035747 other upstream 447120 28611272 ~ 28612322 (-) True XLOC_018136
TCONS_00035753 other upstream 668610 28832762 ~ 28842571 (-) False XLOC_018139
TCONS_00035760 other upstream 707733 28871885 ~ 28875874 (-) False XLOC_018141
TCONS_00035770 other upstream 883031 29047183 ~ 29050045 (-) True XLOC_018144
TCONS_00035788 other upstream 1331148 29495300 ~ 29495435 (-) True XLOC_018151

Expression Profile

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