RNA id: CI01000325_05746064_05750106.mRNA


Basic Information

Item Value
RNA id CI01000325_05746064_05750106.mRNA
length 1671
RNA type mRNA
GC content 0.44
exon number 7
gene id CI01000325_05746064_05750106
representative True

Chromosome Information

Item Value
chromosome id CI01000325
NCBI id null
chromosome length 10587162
location 5746064 ~ 5750106 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGGCAGTAGCCAGAGCAACAATGGCTGCTTCAAGGACAACAAATGAAGACCTAGAGGACTATAGTGCTTATGTACACATGTCTGAACAACAGCTGCTCCAGTTAGCTATTGAGCGAAGTCTAGCTGATACAAATTTAACCCCATGGCAGGACCGACAACTGCATACCCACACAGAGCCAGCTGGCCCTACACAAAGACCACAATTCATCCCTAACTCGGCAAACCCCCCCAATGAGAATAAGTGTGCACAAATCAACAGAGATTGTCAAGATCATTACTTCAGTAAGGACAAAGACAAGGTGATTGCCTGGACAAGGTACAATGGACACCTGCAGGTCACAGTGGAGCCTATGAATGATATAGACCCTTTTCTCTCAGCCATTTGGAGAGGAGATGCAAAGGCTCTACGACACATCGTTCATTTCAAATCTAAAAATCTCGATGAACCCAATAAAGAAGGCTGGATACCGCTTCATGAGTCTGCATACTATGGCCATCTCGAGTGCCTTAAGATTTTGCTCAGAGCCAAGCCAGATACAATCAACAAACGAACACACAGAAGTCAGACACCGCTTTTTCTGGCTGTGGGTCGCAAAAATGTTTCTTGTGTGAAGCATCTCTTGGAGCATGGAGCTGATCCTAACCTTGCAAATAACCAATGGGAGACACCACTGCACAGAGCATGCGAGAAACCTAATGAAGAGATTGTGGAGCTTCTTTTGAAATCCGGAGCTTCACCAATCAGAGCCTGTATTCAAGGCGGGACCCCACTACATGAAGCAGTGAGGAACAAAAACTTAGAGATTTGTAAGATGTTGGTACAAGCAGGAGCAAAGCTGTGTGCCAAAAATATTTATGGCATTGACAGTCTGTTTACGGCTGCTCAGTGTGATGCTGTTGATGTGCTTAACTACCTAATATTGAAAGGAGGTAATATTAATACCCAGGCAAATGATAATGCATCCGCATTGTTTGAGGCTTCTAAGAATGGTCATGATGAAGTTGTTGAGATCCTCTTGACGAAAAGAGCTGATGTTAACAAAGCCGACAAAAGTGGATTACTTCCTATTCATGTTGCAGCAAAGAATGGTCATGAGAGCATTGTTGCCATGCTAATCCCTAGAACTAACATGGTCAAAGTGAAATACTCCGGCATCAGTCCTCTTCATTTTGCTGCAGAACAAAACAGAGATGATGTTCTAGAAACGTTGATTGAGGCTGGATATGACGTCAATGCCATGCTGTCAAATGATTGGTCAAAAATGCATGAAGATCGCCGCAGCACAGCTCTGTACTCGGCTGTGGCAAACAGGAACGTTGAGGCAGCTACTATGCTGTTAGAGGCAGGTGCTGACCCCAACCTGGACATTTTCAACCCCCTGCTAGTGGCTGTGAGGAAAGGAAGTATGGAAATTGTGGCCTTGCTGATAAAGCATGGTGCTAATGTCAATGCCCTGCTGCCAACTCATCCCACCAGCTTCCCAGCGGTTTTGGTTTTCTGTGTGAGGTACACGTTGATGTTGAAGTATCTACTGGACAATGGCTGCGATGCACTATCATGTTTTAACTGTCAATATGGCAGTAATCCTCATCCCCCTATAAAACTAAGACGAAATGGACGAGAAACAATATATTATTTAAATGATGAACCATCAGAACACTGTGTACAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU534729 lncRNA downstream 7918 5730234 ~ 5738146 (-) False G465849
TU534728 lncRNA downstream 7955 5730234 ~ 5738109 (-) False G465849
TU534730 lncRNA downstream 7955 5730234 ~ 5738109 (-) True G465849
TU534687 lncRNA downstream 52028 5693252 ~ 5694036 (-) True G465812
TU534704 lncRNA downstream 91464 5653972 ~ 5654600 (-) True G465829
TU534734 lncRNA upstream 3852 5753958 ~ 5755473 (-) True G465851
TU534745 lncRNA upstream 18149 5768255 ~ 5770105 (-) True G465862
TU534742 lncRNA upstream 37657 5787763 ~ 5789846 (-) True CI01000325_05787773_05791837
TU534809 lncRNA upstream 143350 5893456 ~ 5893732 (-) True G465923
TU536028 lncRNA upstream 185506 5935612 ~ 5935962 (-) True G467017
CI01000325_05706302_05715899.mRNA mRNA downstream 30165 5706201 ~ 5715899 (-) True CI01000325_05706302_05715899
CI01000325_05572394_05599826.mRNA mRNA downstream 146238 5572382 ~ 5599826 (-) True CI01000325_05572394_05599826
CI01000325_05531464_05543064.mRNA mRNA downstream 203000 5531251 ~ 5543064 (-) False CI01000325_05531464_05543064
CI01000325_05462254_05467455.mRNA mRNA downstream 278609 5461522 ~ 5467455 (-) True CI01000325_05462254_05467455
CI01000325_05442728_05452338.mRNA mRNA downstream 293608 5442631 ~ 5452456 (-) True CI01000325_05442728_05452338
CI01000325_05782613_05785408.mRNA mRNA upstream 32108 5782214 ~ 5785948 (-) True CI01000325_05782613_05785408
CI01000325_05787773_05791837.mRNA mRNA upstream 37497 5787603 ~ 5791837 (-) False CI01000325_05787773_05791837
CI01000325_05968651_05972436.mRNA mRNA upstream 216882 5966988 ~ 5972833 (-) True CI01000325_05968651_05972436
CI01000325_05991862_05992674.mRNA mRNA upstream 240021 5990127 ~ 5992733 (-) True CI01000325_05991862_05992674
CI01000325_06064671_06069495.mRNA mRNA upstream 313725 6063831 ~ 6069640 (-) True CI01000325_06064671_06069495
TU534579 other downstream 117896 5626213 ~ 5628168 (-) True G465716
TU534394 other downstream 213222 5520774 ~ 5527058 (-) True G465562
TU534419 other downstream 311011 5434198 ~ 5435053 (-) True CI01000325_05430077_05434997
TU534264 other downstream 929986 4811313 ~ 4814260 (-) True G465464
TU533223 other downstream 2296886 3447987 ~ 3449178 (-) True G464576
TU536664 other upstream 1865380 7615486 ~ 7616830 (-) True G467570
TU536674 other upstream 2196239 7946345 ~ 7955192 (-) True G467578
TU536851 other upstream 2814524 8564630 ~ 8568433 (-) True G467737
TU536859 other upstream 2929066 8679172 ~ 8697583 (-) True G467741
TU537690 other upstream 3535426 9287209 ~ 9287324 (-) True G468455

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00035727 False 2447 mRNA 0.42 10 NC_007131.7 27316678 ~ 27325258 (-)