RNA id: CI01000325_05462254_05467455.mRNA


Basic Information

Item Value
RNA id CI01000325_05462254_05467455.mRNA
length 2019
RNA type mRNA
GC content 0.37
exon number 10
gene id CI01000325_05462254_05467455
representative True

Chromosome Information

Item Value
chromosome id CI01000325
NCBI id null
chromosome length 10587162
location 5461522 ~ 5467455 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AATTATGAGTCTATGTCCTCTTCATCTGAATCTGATGAGTTCCCCAGTCTCTCATTTCAGCCGAGCTGCTCATTTGACGACATAAACAAACTTGTATGTGAACTTACTGGGAGACTGGAGACTACTTGTATGCAGGAAATAAACAAAACAATTAATAAAGTTTCAGATTTGTCAACAAAGAGGCCTCCATCTGATATTGCAGTTGGAGACAGAGTCCGCGTGAAGCCGTCTGTTGTTATTCCAACACAAAAATGGGGATCAGTTACTCACATTAGTATTGGTGTTGTCAAAAAAATTCAGGGTGAGCTTTTGACTGTAGATTTCCCCGAACAAAAAAACTGGACTGGTGTAGTTTCAGAAATGGAGCGTGTGACCAGTGCTGGTTCAGATTTATTAACAAAGAACGCTTCAGTCGACATCAAGGTTGGAGACAGAGTCAGAGTAAAACCCTCCATAACTACCCCAAAACATAACTGGGGTAGAAATGTCACACATAAGAGTGTGGGTGTGGTAAAAGGCAAGAGCTATACATTTTTCCTTGCACAAATCAAAATTTTTATCAAAAAATCCTCACTCAAGTACAAGTGTTACAATATGAACTTGTTCTGTTTAGACATTAAAGGTGATGACAGTCTGGTTGTTGACTTCCCTGGACATGCAAACTGGAAAGGAATGCTCTCTGAAATGGAGCGAGTAACTAATGATGATGAGATGGGAGCTTCAAGTCTAGATTCCATTATTAAGATTGGAGACAAAGTCCGTGTGAAGCCATCTGTTGTTACTCCAACACACAAATGGGGAGCAGTCACTCACAAAAGCATTGGTGTTGTTAAAAAAATTCAGGGTGAATCTTTGACTGTAGATTTCCCTGAACAAAAAAACTGGACTGGTATAGTTTCAGAAATGGAGACTGTGGCCAGCGCTAGTTCAGGATCTTCAGGTCTGGAGTCCAGTATTAAGATTGGAGACAAAGTCCGTGTGAAGCCGTCTGTTGTTACTCCAACACACAAATGGGGAGCAGTCACTCACAAAAGCATTGGTGTTGTTAAAAAAATCCAGGGTGAGTCTTTGATTATTGATTTCCCTGAGCATAAAAACTGGACCGGTATAGTTTCAGAAATGGAGCTTGTGACCGACACTGGTACAGATATCAAATTTGAAGATGTGATAGTGGATTTCCCCAATCACAAAGGGTGGAAAGGGATTCTTTCTGAGATGGAACTGATAGATAATTCAGACAAATTCTTTTTTGTTCACATCTGTCTTACAGCCATTTTGAACTCATGAGAGTTATTTGATTAGACTTGCATAAATATTCCTGTTCATTCAGGTGTTTCAAATTCAGTATCGAAACCAATCTTGTTCCCATTTTTTTCTGTTCTTCACTTTGACTCATATGATTGCATATTTTAATGTAGCCTATGGCTGCTGTAGAAAGAATATATTTTATGTCTTTCTCAAAGGGATAGTTCACCCAAAAATGAAAATTCTGTCATCATTTACTCACTCTCAAGTAGTTCCAAACCTGTATGAATTTCTTTGTTTTCTTTCCTGCTGAATACAAAAGAAGATATAACCAAACAGATCTCACCCTCCACTGACTACCATAGTATTTATTTTTCCTACTATGGTAGTAAATGGGGGGCGAGATCTGCTTGGTTACTGATATTCTTTCAGATATCTTCCTTTGTGTTCAGCAGAACAAAGAAATTCATACAGGTTTGGAACAACTTGAGGGTGAGTAAATGATGACAGAATTTTCATTTTTGGGTCCCTCTTATCCCTTTAAGAGGTGTATAAGGCAGACATTGATTGTAAATTATCAACTGAAATTTATGTTTCAGCTCAGGGAATATGCACACAGAAATTTGTTCATTCAGTTTTAATTTAAGAATAATTTTAACAAATTATTAATTAATTATACATTTAATAATAATAAAATTCCTGTCAAAATACCATACACAAATGCAAATAGTGCTGCTATATTAGTATTTTTGTCTTTTGAGTGAACTTAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU534499 lncRNA downstream 180815 5229636 ~ 5280707 (-) True G465647
TU534484 lncRNA downstream 276462 5183134 ~ 5185060 (-) False G465643
TU534494 lncRNA downstream 276462 5183134 ~ 5185060 (-) True G465643
TU534442 lncRNA downstream 438251 5021285 ~ 5023271 (-) True G465602
TU534384 lncRNA downstream 467110 4992176 ~ 4994412 (-) True G465555
TU534567 lncRNA upstream 43706 5511161 ~ 5511386 (-) True G465709
TU534568 lncRNA upstream 44230 5511685 ~ 5511928 (-) True G465710
TU534569 lncRNA upstream 47518 5514973 ~ 5515739 (-) False G465711
TU534570 lncRNA upstream 47518 5514973 ~ 5515784 (-) True G465711
TU534395 lncRNA upstream 53319 5520774 ~ 5530557 (-) True G465562
CI01000325_05442728_05452338.mRNA mRNA downstream 9066 5442631 ~ 5452456 (-) True CI01000325_05442728_05452338
CI01000325_05430077_05434997.mRNA mRNA downstream 26269 5430010 ~ 5435253 (-) False CI01000325_05430077_05434997
CI01000325_05382331_05383024.mRNA mRNA downstream 78498 5382050 ~ 5383024 (-) True CI01000325_05382331_05383024
CI01000325_05360218_05367885.mRNA mRNA downstream 93509 5359816 ~ 5368013 (-) True CI01000325_05360218_05367885
CI01000325_05334527_05357747.mRNA mRNA downstream 102760 5334527 ~ 5358762 (-) True CI01000325_05334527_05357747
CI01000325_05531464_05543064.mRNA mRNA upstream 63796 5531251 ~ 5543064 (-) False CI01000325_05531464_05543064
CI01000325_05572394_05599826.mRNA mRNA upstream 104927 5572382 ~ 5599826 (-) True CI01000325_05572394_05599826
CI01000325_05706302_05715899.mRNA mRNA upstream 238746 5706201 ~ 5715899 (-) True CI01000325_05706302_05715899
CI01000325_05746064_05750106.mRNA mRNA upstream 278609 5746064 ~ 5750106 (-) True CI01000325_05746064_05750106
CI01000325_05782613_05785408.mRNA mRNA upstream 314759 5782214 ~ 5785948 (-) True CI01000325_05782613_05785408
TU534419 other downstream 26469 5434198 ~ 5435053 (-) True CI01000325_05430077_05434997
TU534264 other downstream 645444 4811313 ~ 4814260 (-) True G465464
TU533227 other downstream 2012344 3444730 ~ 3449178 (-) False G464576
TU533223 other downstream 2012344 3447987 ~ 3449178 (-) True G464576
TU532008 other downstream 3104919 2347744 ~ 2356603 (-) True G463451
TU534394 other upstream 53319 5520774 ~ 5527058 (-) True G465562
TU534579 other upstream 158758 5626213 ~ 5628168 (-) True G465716
TU536664 other upstream 2148031 7615486 ~ 7616830 (-) True G467570
TU536674 other upstream 2478890 7946345 ~ 7955192 (-) True G467578
TU536851 other upstream 3097175 8564630 ~ 8568433 (-) True G467737

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00035711 False 3313 mRNA 0.40 18 NC_007131.7 26931496 ~ 26937453 (-)