RNA id: CI01000325_05572394_05599826.mRNA


Basic Information

Item Value
RNA id CI01000325_05572394_05599826.mRNA
length 3756
RNA type mRNA
GC content 0.56
exon number 14
gene id CI01000325_05572394_05599826
representative True

Chromosome Information

Item Value
chromosome id CI01000325
NCBI id null
chromosome length 10587162
location 5572382 ~ 5599826 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGGGTGTGAATGCCTCCAGCTACCCTCACTCGTGCTCCCCTCGATTCGGGGGTAACCCACAGACCCAGCAGACCTTCATAGGCGCCTCCTATGCACCACAGGGTTATGGCGGCGAGTCCAAGCTCTACAGCCTAGAACATGGCCCTGAAAAACCTCAGGACAAGAAGAAAAAGAGCTCTGGTTTGGCCACCCTCAAGAGGAGGTTCATTAAGCGACGCAAGTCCAGTCGGTCGGCCGATCATGCACGGCAGATGCGCGAGCTCCTCTCAGGGTGGGATGTGCGTGACGTCAATGCCCTGGTGGAGGAGTATGAGGGCACGGCAGCGCTCAAAGAGCTCAGTCTGCAGGCGGGCCTGGCCCGGCCCGAGGCGCGCACCCTGCAACGTGATTTAGCCACCCTTTATCAGCACAAGTACTGCACCGACGTGGACCTGATCTTCCAGGATTCCTGCTTCCCAGCACACCGTGCCGTTCTGGCTGCCCGCTGCCCGTTCTTCAAAACCCTGCTTTCGTCGTCACCGGGTTATGGGGCTGAGGTGTTGTTGGACGTTGGGACAGCAGGCATGGATGCGCCTATGTTCTCCTCATTGCTGCATTACCTCTACACGGGTGAGCTGGGCTCGGAGGACGCAAGGTTGCAGAATGTGGATGTGCTGGTGAGACTGAGCGAAGAGTTCGGTACGCCCAACTCCTTAGAAGCCGACATGCGAAACCTCTGTGAGCACATGCCATATTTTGACTCGCTGCTGAGCTTCTCCTCGGACTCTGAGCTGGTGGAGGCCTTCGGAGCAGGTGGACCTGCTCCTAGCGGCATGGGAAGTGGAAACGCAGGGGTGAGCCACAGCTTGCCTGAAGAGGAGCTAAGGGCCCACAAGTCAGTGCTCTCGGCACGCTCACCTTTCTTCCGCAACCTTCTGCAACGACGCATCCGCTCGGGTGAGGAGATCACTGAGCGCACTCTGCAAACCCCCACCCGTATTATCCTCGATGAATCCATCATTCCCAAGAAGTACGCCCGAGTGGTCTTGCACTGCATGTACACAGATGCGGTTGACCTTTCGCTGGTGCTCCGCGGGAGCCCTTCTGAAGGCAGTCTTGGTGAAGTTCAGGCGCTGGTGGCTGGGAGAGGATGCATGAGCCGGGCCGAAGAAGCCATGGAGCTCTACCACATTGCCCTCTTCTTGGAGTTCAGCATGCTTGCTCAGGCCCTTATTGTGAATTTGCCAGTTTATCTCTATTTACAGCACAAACTGATGGGCTTCAGCTGTGCAAAGATATGTTTTTCAGAGAGCCACCCATCCTTCCAGTTACTTCATCTGAATAAGACTATCAAACCCTGCGCTCTACAGCACAGGTCTGCAGCGTCGGTGTCAGCTGATCCTTATGACCTGTTGGACAAGTCAGTCCTCGGTCATTCAAAGAAAGCCCAAGATGGAGTACTCGGCAATGAACACAAGCAATCATTGAGGTCGTTTCAGTGCATGTGTGTTGATAGCCTCCGGTGGGAGACAAAGGTGGCGATGACCTCTAGGAAATGGAGGCACAGCAGTCATTTAACACCCAGTCAGCAGTCGGCCAGTGGATGGAAATCAGCTCATGCAGCTGTGGATCCTGTTAACCTCTTTGTTAAACCTAAGCTGTCGACATATGGTGGGGATGCACAGATGCCAATAACTGACTTTCGTTTCTGCTCTCTATTTAGGACACTCATCTCATGCTGTGAAGACATTGTGGCAGACAGCATCTCGCTGGACACTGTGGTGGCCATCCTGAAGTGGAGCTCACAGCCCTATGGCTCCAAATGGGTTCATCGGCAGGCCATGCACTTCCTGTGCGAGGAGTTCAGCCAGATCATGACCTCCGACGTCCTCTATGAGCTAAGCAAGGAGCACCTGCTGGTGGCCATTCAGTCTGATTATCTGCAGGCCAGTGAACAGGACATCCTCAAGTATGTTGTGAAGTGGGGCGAACACCAGCTCATCAAGAGGATGGCCGATAGAGAGCCGAACCTGTTAAGTGGTACTGCACATAGTGTGAATAAACGTGGTGTGAAAAGAAGGGATCTGGACCTGGAAGAGCTTAAAGAGATTCTCTCTCCGCTGCTGCCTTTCGTCCGAACTGAGCACATATTACCCACCAACAGTGAGGTCCTCTCTGACACTATGAAGAGGGGTCTGATCAGCACCCCTCCTTCTGACATGCTGCCCACAGCAGAGGGAGGCAAAGCCAACGCCTGGCTCCGGCAGAAGAGTGCTGGCATTTATGTCCGCCCACGGCTCTTCTCTCCTTATGTGGAGGAGGCCAAGGCGGTTCTGGAGGAGATGATGGTTGAGCAGACCGATCTGGTTAGGCTGCGCATGGTTCGTATGTCCAATGTACCCGACACACTCTACATGGTGAACAATGCCGTCCCTCAGTGCTGTCACATGATCAACCACCAGCAAATGGCTGGCAGCCAGACAGCTCCGCCGTCTGTGGTTGCTAATGAGATACCAGTGCCCAGGTTGGCAGTAGTGAAGGAAATGATCCGTAGGCTGCAGGAGCTGCGTCACACAGACCAGGTGCAGCGAGCGTATGCTCTGAACTGTGGTGAGGGCGCCACAGTCAGCTACGAGCTGCAGATCCGTGTGCTCCGAGAGTTTGGCCTACCTGACGGGGCTGCAGAACTCCTACAGAATCCGCACAAATTCTTTCCTGAGGAGCGTTTCGGAGATGAGAGTCCCGTCCTGGCCTTGCGCCAGTCAGGTCGCTGCCGGGTCAACAGTACACCAGCTGTGGAGAGTATGTTCACTGACCTGGAGGCTCTGGTGGGCTTCCACCCTCCTCTGCCCCCACCTCCTCCACCATACCATCCCCCGACCACCCCGGGCCATAGCCAGCAGCAGTTTAAAGCAGGCTGGAGACCACGGGTCCCCAGCCAACCTCCCTCCAGATCTTTCTCCTACCCCTGCAATCATGCACTCCTTCATAGGCAGCCCTCTTCTAAAATGGGCAGCCCAGTCTACCCACCAGGAGCCAAACCCCTACCCCCAGACTGCACTAATGCACAGGGGGGAAGGAATCTTCATCCTGACAAGCAAATGCAGAACATGGAGCCTGTCATCAACGAGTTCATGCCAGACATCGCCATGGGTGTTTCGGCAATGAGCCTGAAGGAACGGCGACTTCCGGAGGTCTCTATGGAGGTGGAGAGTCACGAAGCACACCCTCACCTTTCTACAGCTCCTCCCATGTCCCACAGCTACTCCAGCCGTCACCCGCACTCCTCCCGCAAGCGGCATGCAGCCGAATCCAAGCCCGAGGGCCCGCAGCCTGACTTCCCAGATCTCTACGAGTTCCCGGGCCGCCACGCACCTCCCTACTGTGGACCAGACCTCTACATCCACGGGCGTCAGGCAGGCGGAGGGGCGCCACCTCCGTCCTACTCAGAGGCTTCAGAATCACTCCGCCTGGATGTGCTGGAACAGCCTCCACAGAGACTAGACTTGGCGATCGTCTCGCAAGGGGGCGTTGCGCAAGCCGTGCAGAGGTCACGGCCCATAAATGAGACGGACCTCACCTGTGGGCTCGGCCCCTCCACAGAACAGTATGAGGAATGGCCCACAGGCCGCCGGCCTGCTCCAGAGGGAATTGGGCTGGGCTTAGGGGCGAACGTAGGGACTGGGGATGAGGGAGGGTTGGGTGCCCGAGACCGAAGGTCACCCAACAAACCTGACTACCCCTACAGGAAGTCTGCTCTCTGACCCCTGATTAAA

Function

GO: NA

KEGG:

id description
K10479 BTBD7; BTB/POZ domain-containing protein 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU534395 lncRNA downstream 41825 5520774 ~ 5530557 (-) True G465562
TU534570 lncRNA downstream 56598 5514973 ~ 5515784 (-) True G465711
TU534569 lncRNA downstream 56643 5514973 ~ 5515739 (-) False G465711
TU534568 lncRNA downstream 60454 5511685 ~ 5511928 (-) True G465710
TU534567 lncRNA downstream 60996 5511161 ~ 5511386 (-) True G465709
TU534704 lncRNA upstream 54146 5653972 ~ 5654600 (-) True G465829
TU534687 lncRNA upstream 93426 5693252 ~ 5694036 (-) True G465812
TU534728 lncRNA upstream 130408 5730234 ~ 5738109 (-) False G465849
TU534729 lncRNA upstream 130408 5730234 ~ 5738146 (-) False G465849
TU534730 lncRNA upstream 130408 5730234 ~ 5738109 (-) True G465849
CI01000325_05531464_05543064.mRNA mRNA downstream 29318 5531251 ~ 5543064 (-) False CI01000325_05531464_05543064
CI01000325_05462254_05467455.mRNA mRNA downstream 104927 5461522 ~ 5467455 (-) True CI01000325_05462254_05467455
CI01000325_05442728_05452338.mRNA mRNA downstream 119926 5442631 ~ 5452456 (-) True CI01000325_05442728_05452338
CI01000325_05430077_05434997.mRNA mRNA downstream 137129 5430010 ~ 5435253 (-) False CI01000325_05430077_05434997
CI01000325_05382331_05383024.mRNA mRNA downstream 189358 5382050 ~ 5383024 (-) True CI01000325_05382331_05383024
CI01000325_05706302_05715899.mRNA mRNA upstream 106375 5706201 ~ 5715899 (-) True CI01000325_05706302_05715899
CI01000325_05746064_05750106.mRNA mRNA upstream 146238 5746064 ~ 5750106 (-) True CI01000325_05746064_05750106
CI01000325_05782613_05785408.mRNA mRNA upstream 182388 5782214 ~ 5785948 (-) True CI01000325_05782613_05785408
CI01000325_05787773_05791837.mRNA mRNA upstream 187777 5787603 ~ 5791837 (-) False CI01000325_05787773_05791837
CI01000325_05968651_05972436.mRNA mRNA upstream 367162 5966988 ~ 5972833 (-) True CI01000325_05968651_05972436
TU534394 other downstream 39540 5520774 ~ 5527058 (-) True G465562
TU534419 other downstream 137329 5434198 ~ 5435053 (-) True CI01000325_05430077_05434997
TU534264 other downstream 756304 4811313 ~ 4814260 (-) True G465464
TU533227 other downstream 2123204 3444730 ~ 3449178 (-) False G464576
TU533223 other downstream 2123204 3447987 ~ 3449178 (-) True G464576
TU534579 other upstream 26387 5626213 ~ 5628168 (-) True G465716
TU536664 other upstream 2015660 7615486 ~ 7616830 (-) True G467570
TU536674 other upstream 2346519 7946345 ~ 7955192 (-) True G467578
TU536851 other upstream 2964804 8564630 ~ 8568433 (-) True G467737
TU536859 other upstream 3079346 8679172 ~ 8697583 (-) True G467741

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00035718 True 3905 mRNA 0.54 11 NC_007131.7 27114874 ~ 27190393 (-)
bowfin (Amia calva) AMCG00000136 True 7957 mRNA 0.46 8 CM030141.1 5140428 ~ 5157464 (+)