RNA id: CI01000325_05706302_05715899.mRNA


Basic Information

Item Value
RNA id CI01000325_05706302_05715899.mRNA
length 2126
RNA type mRNA
GC content 0.47
exon number 9
gene id CI01000325_05706302_05715899
representative True

Chromosome Information

Item Value
chromosome id CI01000325
NCBI id null
chromosome length 10587162
location 5706201 ~ 5715899 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGGCAGCCGCCCATGTGTCCATGCCAGGTACCAGAGGAACCAACCTGGAATTTGCTGACTACAGTCTCTATAGCAACCTGTCTGATGATGAGCTCATGCAGCTGGCAATCGAGCGGAGCCTTGCTGATGGCCAGAGCTCTGGGCCGAGGTCAGAAAACTCTAACAATCCCGCTACTCTGAACACGCCAAGAGTACCACGCCAAGCTCCACCAATGCATCGTCCCCAGCAGCAACTAGAACCAGCTGCGTGTCCTGCCAATCCACCAAGGTACAGTGTGACGTGTTTCATTCAAGTTGAAATGAGAGAAAATCCACAGGGTGTGTGTTCAGTGGGTCACTTTGTGACTGGTTCTGGCAAGCGAATGGTGGCGTATCGAAGATATGATGGAACTATGCAAGTCGCACCTGAGCCTGAAGAGGAGATTGCGCCTATTGTTAAGGCCATTTTGGACGGTGATGTAGGAACAGTGAGTCTATTGGTTAAGCAACCTGGTTGCAATGTTCTTGCACCAAATAAAGATGGATGGATTCCTTTGCACGAGGCGGCATATTATGGACAAGATCAATGCATTAAGATTCTCCTGAGAGCTCAACCTGGAATGGTTAACCAGCGCACTTTAAAAGGGAAGACTGCTTTAATGTTCGCTGTGGCCAGGGATCACCTTGCATGTGTAGAGAGTCTTCTGGAGAATGGGGCTGATCCTGATATTTCCAATATGGAGAGGGAGACTCCCCTTTACAAAGCTTGTGAGAAGGAGAACCCAGCAATGGTTGCCATGTTACTGAATTATGGCGCCTCTGTGAATAAGAACTGTATTCAAGGCTGGACCGCTCTCCATGAGAGTGTGTGCAGGAACAATGTGGAAATCTGTGAGATGCTGGTGAAAGCTGGAGCCAAAGTCAACATGCCCAACATGTACGGAATTACTCCTATCTTTGTCGCCGCCCAAAGTGGAAAAGTGGATGCACTTCGCATGCTTTTAAAAAATGGTGCAGATCTCAACAGCCAGGCCACAGATGGAGCCACAGCGCTGTATGAAGCCTGTAAAAATGGTCATGATGACATTGTAGAGTTCCTTCTATCTCAAAATGCAGACGCCAACAAGCCGGGCAAAACAGGACTGATGCCAATCCATATTGCTGCCCAGCGTGGCAATGATGGCATTGTATCCATGCTGATCCGAGCCACAAGTAAGGCCAGAGTCAGACGTTCAGGTATCAGCCCTCTCCATTTAGCAGCGGAGCGCAACAGAAATGATATTCTCGAGTTACTGATCGAGGCTGGCTTTGATGTCAATGCCACACTGTCTGATGATCGTTCTATGATGTATGAAGATCGACGCAGCACAGCTCTCTACTTTGCGGTCATAAACAACAACATCGATGCTACCACCATGCTCCTGGAGGCTGGTGCTAACCCAAACCTGGACACGTTCAAACCGCTCCTGGTGGCCCTGAGGCAGGGTTGCATACAGACAGTGACTATGCTGGTGAAACATGGTGCTGATGTCAATGCCTACATCCCAACTCACCCAACTGCCTTTCCAGCTGCTGTTATGTTCTGTTTGAAGAATCTGTCCTTACTGAAGTATCTGATGGATAATGGCTGTGATGCCTTGTCATGTTTTAATTGTGTTTATGGCAGAAATCCTCATCCTCCTATAAAGATTAGGCGTAATCTAAGATATGATTCAGAAGAAACTATGGAAAAGACCTGTGTTCAGTTCTGCGAGTTGATCTCCACCGAAACCTACTCCCACTGGGCAGGACCGATTATAGACGTGCTGCTTGACTATGTTGGGCACGTGAAACTCTGTGCACGCCTCATTGAACATCTGGACAGTTATTACGAGTGGCAATGCATCAAAGAGAAATCAACGCCTCCACGCCCACTCATGCAGCTCTGCAGACTGGAAATCCGCAAACTGCTCGGGATCAACAGACTGAAGAAAATTTGCAAGCTTCCAGTTCCTCCAAGGTTGATCAAATTCCTAAATCATCAAGAACGAGAGATAGACTTTTAAGCCTGCCAGAGTGTTGTAGTTAGTACAGAGAGAACAATGACATTAGAAAATCATATACTTCTGTTTGAAGAACTTGCACTAAGCTAAAATTCTAGAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU534687 lncRNA downstream 12165 5693252 ~ 5694036 (-) True G465812
TU534704 lncRNA downstream 51601 5653972 ~ 5654600 (-) True G465829
TU534395 lncRNA downstream 175644 5520774 ~ 5530557 (-) True G465562
TU534570 lncRNA downstream 190417 5514973 ~ 5515784 (-) True G465711
TU534569 lncRNA downstream 190462 5514973 ~ 5515739 (-) False G465711
TU534728 lncRNA upstream 14335 5730234 ~ 5738109 (-) False G465849
TU534729 lncRNA upstream 14335 5730234 ~ 5738146 (-) False G465849
TU534730 lncRNA upstream 14335 5730234 ~ 5738109 (-) True G465849
TU534734 lncRNA upstream 38059 5753958 ~ 5755473 (-) True G465851
TU534745 lncRNA upstream 52356 5768255 ~ 5770105 (-) True G465862
CI01000325_05572394_05599826.mRNA mRNA downstream 106375 5572382 ~ 5599826 (-) True CI01000325_05572394_05599826
CI01000325_05531464_05543064.mRNA mRNA downstream 163137 5531251 ~ 5543064 (-) False CI01000325_05531464_05543064
CI01000325_05462254_05467455.mRNA mRNA downstream 238746 5461522 ~ 5467455 (-) True CI01000325_05462254_05467455
CI01000325_05442728_05452338.mRNA mRNA downstream 253745 5442631 ~ 5452456 (-) True CI01000325_05442728_05452338
CI01000325_05430077_05434997.mRNA mRNA downstream 270948 5430010 ~ 5435253 (-) False CI01000325_05430077_05434997
CI01000325_05746064_05750106.mRNA mRNA upstream 30165 5746064 ~ 5750106 (-) True CI01000325_05746064_05750106
CI01000325_05782613_05785408.mRNA mRNA upstream 66315 5782214 ~ 5785948 (-) True CI01000325_05782613_05785408
CI01000325_05787773_05791837.mRNA mRNA upstream 71704 5787603 ~ 5791837 (-) False CI01000325_05787773_05791837
CI01000325_05968651_05972436.mRNA mRNA upstream 251089 5966988 ~ 5972833 (-) True CI01000325_05968651_05972436
CI01000325_05991862_05992674.mRNA mRNA upstream 274228 5990127 ~ 5992733 (-) True CI01000325_05991862_05992674
TU534579 other downstream 78033 5626213 ~ 5628168 (-) True G465716
TU534394 other downstream 173359 5520774 ~ 5527058 (-) True G465562
TU534419 other downstream 271148 5434198 ~ 5435053 (-) True CI01000325_05430077_05434997
TU534264 other downstream 890123 4811313 ~ 4814260 (-) True G465464
TU533227 other downstream 2257023 3444730 ~ 3449178 (-) False G464576
TU536664 other upstream 1899587 7615486 ~ 7616830 (-) True G467570
TU536674 other upstream 2230446 7946345 ~ 7955192 (-) True G467578
TU536851 other upstream 2848731 8564630 ~ 8568433 (-) True G467737
TU536859 other upstream 2963273 8679172 ~ 8697583 (-) True G467741
TU537690 other upstream 3569633 9287209 ~ 9287324 (-) True G468455

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00035723 False 5237 mRNA 0.39 10 NC_007131.7 27295701 ~ 27311675 (-)