RNA id: TU534687


Basic Information

Item Value
RNA id TU534687
length 557
lncRNA type inter_gene
GC content 0.31
exon number 2
gene id G465812
representative True

Chromosome Information

Item Value
chromosome id CI01000325
NCBI id null
chromosome length 10587162
location 5693252 ~ 5694036 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCAAGTTGCAATTAAATTAGTTCAATGCACAATATATAATAGTTTTACATTTTGGTATGTGATGCATACATTGTGCAACAACCTCTGATTACTCAAATATACATTAATGGCTTGTTCCAGACAAACAATAACACTTATTCTGTTCTGACGACACATCGATTTATGTAAACATCATTGCTCAGTTGTATATGATTTTATATTATGATTCATAGTTCAGTGTTACTGTATGCATGAACACTGCATCACTGTTTTCTAAATACACCAAGCTTCTGTCTATAAAAAAAAAAGATATTTATACATGTTGGATATACAGTTCTAATGAAAAGTAAACTAAACATTAGAGAGGGTCTGATTGTGAGTGACATTACAAGCTAAATTTAGGGTTAAGCTTGTTTGATGAATCACCTTGATACATCTTTGAAGCATCCACTAACCCACATGAAATCACAGTATAACCACTTTAAAAATAGCTTTAAACCATCTTAGTAAAAGCATGATGAGTACATCCTAGTTTTTAAGAGTTGCCAAAAAAGGTCAAGAAAAGACTTGATATGAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU534704 lncRNA downstream 38652 5653972 ~ 5654600 (-) True G465829
TU534395 lncRNA downstream 162695 5520774 ~ 5530557 (-) True G465562
TU534570 lncRNA downstream 177468 5514973 ~ 5515784 (-) True G465711
TU534569 lncRNA downstream 177513 5514973 ~ 5515739 (-) False G465711
TU534568 lncRNA downstream 181324 5511685 ~ 5511928 (-) True G465710
TU534728 lncRNA upstream 36198 5730234 ~ 5738109 (-) False G465849
TU534729 lncRNA upstream 36198 5730234 ~ 5738146 (-) False G465849
TU534730 lncRNA upstream 36198 5730234 ~ 5738109 (-) True G465849
TU534734 lncRNA upstream 59922 5753958 ~ 5755473 (-) True G465851
TU534745 lncRNA upstream 74219 5768255 ~ 5770105 (-) True G465862
CI01000325_05572394_05599826.mRNA mRNA downstream 93426 5572382 ~ 5599826 (-) True CI01000325_05572394_05599826
CI01000325_05531464_05543064.mRNA mRNA downstream 150188 5531251 ~ 5543064 (-) False CI01000325_05531464_05543064
CI01000325_05462254_05467455.mRNA mRNA downstream 225797 5461522 ~ 5467455 (-) True CI01000325_05462254_05467455
CI01000325_05442728_05452338.mRNA mRNA downstream 240796 5442631 ~ 5452456 (-) True CI01000325_05442728_05452338
CI01000325_05430077_05434997.mRNA mRNA downstream 257999 5430010 ~ 5435253 (-) False CI01000325_05430077_05434997
CI01000325_05706302_05715899.mRNA mRNA upstream 12165 5706201 ~ 5715899 (-) True CI01000325_05706302_05715899
CI01000325_05746064_05750106.mRNA mRNA upstream 52028 5746064 ~ 5750106 (-) True CI01000325_05746064_05750106
CI01000325_05782613_05785408.mRNA mRNA upstream 88178 5782214 ~ 5785948 (-) True CI01000325_05782613_05785408
CI01000325_05787773_05791837.mRNA mRNA upstream 93567 5787603 ~ 5791837 (-) False CI01000325_05787773_05791837
CI01000325_05968651_05972436.mRNA mRNA upstream 272952 5966988 ~ 5972833 (-) True CI01000325_05968651_05972436
TU534579 other downstream 65084 5626213 ~ 5628168 (-) True G465716
TU534394 other downstream 160410 5520774 ~ 5527058 (-) True G465562
TU534419 other downstream 258199 5434198 ~ 5435053 (-) True CI01000325_05430077_05434997
TU534264 other downstream 877174 4811313 ~ 4814260 (-) True G465464
TU533223 other downstream 2244074 3447987 ~ 3449178 (-) True G464576
TU536664 other upstream 1921450 7615486 ~ 7616830 (-) True G467570
TU536674 other upstream 2252309 7946345 ~ 7955192 (-) True G467578
TU536851 other upstream 2870594 8564630 ~ 8568433 (-) True G467737
TU536859 other upstream 2985136 8679172 ~ 8697583 (-) True G467741
TU537690 other upstream 3591496 9287209 ~ 9287324 (-) True G468455

Expression Profile