RNA id: TU534579


Basic Information

Item Value
RNA id TU534579
length 659
RNA type TUCP
GC content 0.45
exon number 2
gene id G465716
representative True

Chromosome Information

Item Value
chromosome id CI01000325
NCBI id null
chromosome length 10587162
location 5626213 ~ 5628168 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GATGATATAAAAAAAACTTTATTACAGGAAAAAGCAGTCATTTTGCATGTAGTAAGGGCCACTGCTTACAATGGCATTAAGGGCCACAGTCCTAAGGCATTAAACACCATGAAATTATTTCTCATTAGATTCAAATAGGGCAAACAATTGTTTAACCATATTACCGGATAATTTTATTAATGTATTCTTATACATATTATTTTATTACTTGTGATGTTGCTCGTGATGTTGTATGCTTTAAAGATCTAAATTTTTCACTGGAGGTGAATAATGCTTTAGAGGCAGCCAGGTCTGATGTGGTACACCAGTGTGCATTCTTCAGGATGGTGGGGGTTTTGCTCTCTGCCGATATTCTGGGATGTGGTGCAGAATCCACCCGGCAGGGGCCAGGAGGGCAACGGCAAACACAGACATAATCAAGAAACTTTGCCCAGGTCCGATCTTGCTTTTGGGTGGCTTGCTGTAGATGCTGGAGTTGCGTTTCTGGACAATATCCCTTGCCCTGCAGACTGTCACCGGCTGCACAGCTCCCCTCAGAAAGGCCAGCATCCCACCAGCTGTACGGGTCAGTCTGGATGCGTCTGAGAGAGAGAGAAAGAGGTTAAGGGAGAAGGAAAAAGGGGATGTTCACTGAGTGCAACCGCTGGGTTTCCTGCCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU534395 lncRNA downstream 95656 5520774 ~ 5530557 (-) True G465562
TU534570 lncRNA downstream 110429 5514973 ~ 5515784 (-) True G465711
TU534569 lncRNA downstream 110474 5514973 ~ 5515739 (-) False G465711
TU534568 lncRNA downstream 114285 5511685 ~ 5511928 (-) True G465710
TU534567 lncRNA downstream 114827 5511161 ~ 5511386 (-) True G465709
TU534704 lncRNA upstream 25804 5653972 ~ 5654600 (-) True G465829
TU534687 lncRNA upstream 65084 5693252 ~ 5694036 (-) True G465812
TU534728 lncRNA upstream 102066 5730234 ~ 5738109 (-) False G465849
TU534729 lncRNA upstream 102066 5730234 ~ 5738146 (-) False G465849
TU534730 lncRNA upstream 102066 5730234 ~ 5738109 (-) True G465849
CI01000325_05572394_05599826.mRNA mRNA downstream 26387 5572382 ~ 5599826 (-) True CI01000325_05572394_05599826
CI01000325_05531464_05543064.mRNA mRNA downstream 83149 5531251 ~ 5543064 (-) False CI01000325_05531464_05543064
CI01000325_05462254_05467455.mRNA mRNA downstream 158758 5461522 ~ 5467455 (-) True CI01000325_05462254_05467455
CI01000325_05442728_05452338.mRNA mRNA downstream 173757 5442631 ~ 5452456 (-) True CI01000325_05442728_05452338
CI01000325_05430077_05434997.mRNA mRNA downstream 190960 5430010 ~ 5435253 (-) False CI01000325_05430077_05434997
CI01000325_05706302_05715899.mRNA mRNA upstream 78033 5706201 ~ 5715899 (-) True CI01000325_05706302_05715899
CI01000325_05746064_05750106.mRNA mRNA upstream 117896 5746064 ~ 5750106 (-) True CI01000325_05746064_05750106
CI01000325_05782613_05785408.mRNA mRNA upstream 154046 5782214 ~ 5785948 (-) True CI01000325_05782613_05785408
CI01000325_05787773_05791837.mRNA mRNA upstream 159435 5787603 ~ 5791837 (-) False CI01000325_05787773_05791837
CI01000325_05968651_05972436.mRNA mRNA upstream 338820 5966988 ~ 5972833 (-) True CI01000325_05968651_05972436
TU534394 other downstream 93371 5520774 ~ 5527058 (-) True G465562
TU534419 other downstream 191160 5434198 ~ 5435053 (-) True CI01000325_05430077_05434997
TU534264 other downstream 810135 4811313 ~ 4814260 (-) True G465464
TU533227 other downstream 2177035 3444730 ~ 3449178 (-) False G464576
TU533223 other downstream 2177035 3447987 ~ 3449178 (-) True G464576
TU536664 other upstream 1987318 7615486 ~ 7616830 (-) True G467570
TU536674 other upstream 2318177 7946345 ~ 7955192 (-) True G467578
TU536851 other upstream 2936462 8564630 ~ 8568433 (-) True G467737
TU536859 other upstream 3051004 8679172 ~ 8697583 (-) True G467741
TU537690 other upstream 3657364 9287209 ~ 9287324 (-) True G468455

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00034540 True 1181 lncRNA 0.39 2 NC_007131.7 27194852 ~ 27198481 (+)
mexican tetra (Astyanax mexicanus) TU39042 True 760 lncRNA 0.38 2 NC_035899.1 57991641 ~ 57995476 (-)