RNA id: TCONS_00034540


Basic Information

Item Value
RNA id TCONS_00034540
length 1181
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id XLOC_017363
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 27194852 ~ 27198481 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGCAGGAAACCCAGGGGTTGAACCCAGTGGCCATCCTGCTCTCCTTCTCCCTCAGCTTCTCTCTATCCCTGTCTACGGacatccaaacacagcacacagctGAAGGGATGCTGACCTTTCTGAGGGGAGCAGTGCAGCCAGTGATGGTCAGCAGGACAAGGGATATTGTCCACAAACGCAACTCCAGCATCTACAGCAAACCACCCAAAAACAAGATCGGACCTGGGcaAAGTTTCTTGATCATGTCTGTGTTTGCCGTTGCCCTCCTGGCCCCCGCTGGCTGGATTCTACACCACATCCCAGAATATCGAGAGAGAGCAAAAACACCACCATCCTGAAAACCATCCACTTCTGTCATGGTCAGCAGAAATCTGGCTTACCTCTAAAGCATTATTCACCTCCACAGAAACAATTCAATCATCAGTATCATGAGTACCTTCGGATgtaacaatataatattaaaaatctgttattgtaaagataacaataataaaatacataacagTCCTATCTACAATAAAAAAGATTGAAATGTTTATGATGCCCCATGTGAATGTAATAAGAAATATAATCCTGTGGTGTTTAGTGCCTTAGGACTGTGGCCCTTAATGTAAGCAGTGGCCCTTATTATATACGCTTTCCACTGCAATAAAGTGTGTTTTATACCGTCTGTTTTGGTTGATAAGTTTCACTGGGATAATTGTTCTTGCCTTGAGGGCACCACTTAAAAGTATACACAGAAGTTAGATTGCTTTTCTTGAGGAAAAATTCACTTTGATTATGTCCTATGAGTTTGTGGTGCAGATACTGATAATCATAGATGAAGTTTATTATAAGGCCGGTGGGCAAATTTGATCATGAGTGGGGTTAAATTTACTAATGCCTTCTTCCCAAACCTCTTTTGGTGTTAAAAAACTGCTGTCAGAATCTAGTAAAGACACAAGCTGAAAAATGTGATGAAAGGCATGGACATAGTTTCCATTTTACATGCAAAATTTACGGAGGAGATAATTTCAGTgaataatttgatgtaatttataGTTTGTGGTAGTCAGTTTAGATGGGAATCTACTTCATTCTGTACACAAAATAGTTTTGCCATTTAGTCTTCTgcactttttattttgtatttctgttggTATTGAGATAcatgctaaaataataaatatattgtatcaAG

Function

GO:

id name namespace
GO:0098660 inorganic ion transmembrane transport biological_process
GO:0015672 monovalent inorganic cation transport biological_process
GO:0030001 metal ion transport biological_process
GO:0006814 sodium ion transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0044421 obsolete extracellular region part cellular_component
GO:0005615 extracellular space cellular_component
GO:0004857 enzyme inhibitor activity molecular_function
GO:0003779 actin binding molecular_function
GO:0044877 protein-containing complex binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036597 lncRNA upstream 80860 27108706 ~ 27113992 (+) True XLOC_017362
TCONS_00034533 lncRNA upstream 190345 27003671 ~ 27004507 (+) False XLOC_017358
TCONS_00034515 lncRNA upstream 281176 26905158 ~ 26913676 (+) False XLOC_017352
TCONS_00034517 lncRNA upstream 281345 26905210 ~ 26913507 (+) True XLOC_017352
TCONS_00036596 lncRNA upstream 488823 26704384 ~ 26706029 (+) True XLOC_017348
TCONS_00036598 lncRNA downstream 98663 27297144 ~ 27319696 (+) False XLOC_017365
TCONS_00034543 lncRNA downstream 98671 27297152 ~ 27319696 (+) False XLOC_017365
TCONS_00034544 lncRNA downstream 99229 27297710 ~ 27331060 (+) False XLOC_017365
TCONS_00034550 lncRNA downstream 218039 27416520 ~ 27417816 (+) True XLOC_017369
TCONS_00034553 lncRNA downstream 228632 27427113 ~ 27430814 (+) False XLOC_017370
TCONS_00034538 mRNA upstream 87143 27093042 ~ 27107709 (+) False XLOC_017361
TCONS_00034539 mRNA upstream 87152 27096430 ~ 27107700 (+) True XLOC_017361
TCONS_00034537 mRNA upstream 103999 27087539 ~ 27090853 (+) True XLOC_017360
TCONS_00034536 mRNA upstream 148861 27020201 ~ 27045991 (+) True XLOC_017359
TCONS_00034535 mRNA upstream 155218 27020201 ~ 27039634 (+) False XLOC_017359
TCONS_00034541 mRNA downstream 41907 27240388 ~ 27283820 (+) False XLOC_017364
TCONS_00034542 mRNA downstream 44114 27242595 ~ 27258856 (+) True XLOC_017364
TCONS_00034545 mRNA downstream 100302 27298783 ~ 27371963 (+) False XLOC_017365
TCONS_00034546 mRNA downstream 132527 27331008 ~ 27372450 (+) True XLOC_017365
TCONS_00034548 mRNA downstream 195187 27393668 ~ 27396568 (+) True XLOC_017367
TCONS_00034520 other upstream 251566 26939758 ~ 26943286 (+) False XLOC_017354
TCONS_00034523 other upstream 254297 26940133 ~ 26940555 (+) False XLOC_017354
TCONS_00034514 other upstream 292584 26899745 ~ 26902268 (+) True XLOC_017351
TCONS_00034507 other upstream 599973 26594764 ~ 26594879 (+) True XLOC_017344
TCONS_00034480 other upstream 1613396 25580906 ~ 25581456 (+) True XLOC_017327
TCONS_00034547 other downstream 139525 27338006 ~ 27338121 (+) True XLOC_017366
TCONS_00034549 other downstream 207397 27405878 ~ 27405962 (+) True XLOC_017368
TCONS_00034573 other downstream 1166261 28364742 ~ 28366768 (+) False XLOC_017383
TCONS_00034577 other downstream 1279722 28478203 ~ 28478318 (+) True XLOC_017387
TCONS_00034579 other downstream 1510426 28708907 ~ 28709023 (+) True XLOC_017389

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU534579 True 659 TUCP 0.45 2 CI01000325 5626213 ~ 5628168 (-)