RNA id: TCONS_00034537


Basic Information

Item Value
RNA id TCONS_00034537
length 1949
RNA type mRNA
GC content 0.37
exon number 2
gene id XLOC_017360
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 27087539 ~ 27090853 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAGTCCTATGACAACAACCCTGTGACAAACCGACGCTGTGTGCTTTGGCTTGAGGAACAAATTTTCTAGGAAACCGAGCAAAATGGATTGATCGTGTAATTACAGGAAGAGCATGGAGAATGATGAATTTCCGTCAGCGGATGGGGTGGATTGGTGTCGGACTGTACTTGCTGGCCAGTGTCGCTGCAGTGTATTACATATTTGAGATCAGCCAAACATACAACCGACTTGCATTGGCACAAGTGGAAAAAACATCTGGAGCGCAGGCAAAATGGCCAGGAGACGCTTCATCCTCTTCCCCTTCTTCAACCTCATGGATAGTAACTCTGAAAACGAGACTTCTCCTCTTGCCCTTCTGGGTTTGGGCCACCATTTTCCTCCTTCCCTATCTGCAGGTGTTTCTCTTTCTCTACTCCTGCACAAGAGCGGATCCCAAGACTGTAGGATACTGTATTCTGCCCATCTGCCTTGCTGTCCTCTGCAACCGTCACCAAACTTTCACAAAGGCCTCCAATCAGATCAGCAGACTGCAGCTGATTGACACCTGAAGATGTGGGATCAGATCTTGGTGCCATGTAGTTTGGTGACTGTGGGGTTGAACGATACAAAAGTGCAttcaataattgtttatttttttcagtcctgacttctttttctttcttttttttggttATAGGAGTTAAATGAGGACTATATTTAGGacttttctgtgttttttctttACAAATGAATTGTTCCACACCagtttttattgtgtatttttagcACTACAGACTACAGGCTTGTGATGTTTCATACTGCATCCTTTCAAGCCAAATGATGTAAGTGGTCTGCATTTTCATTGATTAGATTTATTAAAGAGGATCCACAAGTGTTTTCCATGTCAGCACAGTGTAAGGTACTTTTTAGATGTTTAATTTACGTTGaaataaaatgacttttataatttaaataaaatttgataaTTGAAGTCCAAGTCGCCTAAATGGAGTCTGTTAAGCCATGGTCTAAGCTTTGGAGAATATTGTTGGGACCGCATGCAGAACTCTGATGCTAAACTACTTGAATTACACTTTTAATTGTGAGTGGACTGACTAGAAATCAATATGAATAAAGATGTGTCAATGTATACAAGTATATATGTTTCCATAGCATGAGGCCAATGGATTTGTAGTGTCACTTTAATGCTTCAGTTGTTGTTTGTTTCAACTCCAGCAGACATTTTGTTAGTGGAAAATATGAGAACTAGTTCCACTAACAGGATGTGTTTTCATTTCTTTAAACCAGTGTCTGATttgtattgattataaaatgcACTCAAGGaaggaaaaatgtaaaataaggaaACATTTGTATTAAGAACAATCAATCTATGATGAATGCATTTGAATAACAGTATTTCTGTACGATCAAATATGATTTTCTGTCAGctcttaaaagtatttttatgcaATTCTGTTTGACAAACACTAATTATGTTTCACCATAGTGATAATCGAGTGTCCTCAGAGAAAATACATAAGTGTGTTTTGCAAAGCAAGTTCTTGACATTCATTGTTTGTTCGTAAAAGTAGTGCACTCAATCTCATGTCTTATTGTGGAGGGATATCAGTATAATTTTATAGCGTGAATTATCTTATCTTTATAAGAAATGCAAATGGTTCTTTAAAGTTGTTGGGTGTGGTAGAGTTTAACACAAGATTCAAGCTTTATATAAGCCTGTACCACAGATGTTTTAAATGGCTTCTTTGTGGAAATATTGGGTCATATttggattattcattcatttgttaaaatgttgagttttttttactcaaaggGCTTGTCTGTGAATTTTTAATGATGTTTATTGCGTATTTGTTAATAACTTTCCATTGCAATCTCAAAACACTGTGGTTTGAAACAAGTCTGGATTCTGATGAAATCAATAAAGAAATGTGCCGAGTGTA

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041001-121 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMEM251 (transmembrane protein 251).

Ensembl:

ensembl_id ENSDART00000062094

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00034533 lncRNA upstream 83032 27003671 ~ 27004507 (+) False XLOC_017358
TCONS_00034515 lncRNA upstream 173863 26905158 ~ 26913676 (+) False XLOC_017352
TCONS_00034517 lncRNA upstream 174032 26905210 ~ 26913507 (+) True XLOC_017352
TCONS_00036596 lncRNA upstream 381510 26704384 ~ 26706029 (+) True XLOC_017348
TCONS_00036595 lncRNA upstream 523940 26556387 ~ 26563599 (+) True XLOC_017343
TCONS_00036597 lncRNA downstream 17853 27108706 ~ 27113992 (+) True XLOC_017362
TCONS_00034540 lncRNA downstream 103999 27194852 ~ 27198481 (+) True XLOC_017363
TCONS_00036598 lncRNA downstream 206291 27297144 ~ 27319696 (+) False XLOC_017365
TCONS_00034543 lncRNA downstream 206299 27297152 ~ 27319696 (+) False XLOC_017365
TCONS_00034544 lncRNA downstream 206857 27297710 ~ 27331060 (+) False XLOC_017365
TCONS_00034536 mRNA upstream 41548 27020201 ~ 27045991 (+) True XLOC_017359
TCONS_00034535 mRNA upstream 47905 27020201 ~ 27039634 (+) False XLOC_017359
TCONS_00034532 mRNA upstream 74580 27003558 ~ 27012959 (+) False XLOC_017358
TCONS_00034534 mRNA upstream 81966 27003713 ~ 27005573 (+) True XLOC_017358
TCONS_00034531 mRNA upstream 84241 26987416 ~ 27003298 (+) True XLOC_017357
TCONS_00034538 mRNA downstream 2189 27093042 ~ 27107709 (+) False XLOC_017361
TCONS_00034539 mRNA downstream 5577 27096430 ~ 27107700 (+) True XLOC_017361
TCONS_00034541 mRNA downstream 149535 27240388 ~ 27283820 (+) False XLOC_017364
TCONS_00034542 mRNA downstream 151742 27242595 ~ 27258856 (+) True XLOC_017364
TCONS_00034545 mRNA downstream 207930 27298783 ~ 27371963 (+) False XLOC_017365
TCONS_00034520 other upstream 144253 26939758 ~ 26943286 (+) False XLOC_017354
TCONS_00034523 other upstream 146984 26940133 ~ 26940555 (+) False XLOC_017354
TCONS_00034514 other upstream 185271 26899745 ~ 26902268 (+) True XLOC_017351
TCONS_00034507 other upstream 492660 26594764 ~ 26594879 (+) True XLOC_017344
TCONS_00034480 other upstream 1506083 25580906 ~ 25581456 (+) True XLOC_017327
TCONS_00034547 other downstream 247153 27338006 ~ 27338121 (+) True XLOC_017366
TCONS_00034549 other downstream 315025 27405878 ~ 27405962 (+) True XLOC_017368
TCONS_00034573 other downstream 1273889 28364742 ~ 28366768 (+) False XLOC_017383
TCONS_00034577 other downstream 1387350 28478203 ~ 28478318 (+) True XLOC_017387
TCONS_00034579 other downstream 1618054 28708907 ~ 28709023 (+) True XLOC_017389

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU533890 True 1992 TUCP 0.37 2 CI01000325 5552120 ~ 5554577 (+)
rainbow trout (Oncorhynchus mykiss) TU533890 True 279 lncRNA 0.47 1 NC_048570.1 7602019 ~ 7602297 (+)
eurasian perch (Perca fluviatilis) TU204312 True 1460 lncRNA 0.41 3 NC_053126.1 2003422 ~ 2022278 (+)
tiger barb (Puntius tetrazona) TU204312 True 2398 TUCP 0.39 2 NC_056718.1 14051993 ~ 14054833 (+)