RNA id: TU843586


Basic Information

Item Value
RNA id TU843586
length 449
RNA type TUCP
GC content 0.51
exon number 1
gene id G743076
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 71070634 ~ 71071082 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atgaccatctggatgatccagaggaggaatgggagaaggtcctgatgagacaaaaatagagctttttggtctaaactccactcgccgtgtttggaggaagaagaaggatgagtacaaccccaagaacaccatcccaaccgtgaagcatggaggtggaaacatcattctttggggatgcttttctgcaaaggggacaggacgactgcaccgtattgaggggaggatggatggggccatgtatcgcgagatcttggccaacaacctccttccctcagtaagagcattgaagatgggtcgtggctgggtcttccagcatgacaacaacccgaaacacacagccagggcaactaaggagtggctccgtaagaagcatctcaaggtcctggagtggcctagccagtctccagacctgaacccaatagaaaatctttggagggagctgaaagtcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU843527 lncRNA downstream 4625 71043851 ~ 71066009 (-) True LOC110530472
TU843508 lncRNA downstream 89151 70976364 ~ 70981483 (-) True G742999
TU842843 lncRNA downstream 163341 70906902 ~ 70907293 (-) True G742425
TU842841 lncRNA downstream 164546 70905884 ~ 70906088 (-) True G742423
TU842792 lncRNA downstream 245241 70825173 ~ 70825393 (-) True G742375
TU843593 lncRNA upstream 7713 71078795 ~ 71078998 (-) True G743083
TU843618 lncRNA upstream 61606 71132688 ~ 71132961 (-) True G743108
TU843620 lncRNA upstream 62680 71133762 ~ 71133971 (-) True G743110
TU843640 lncRNA upstream 104868 71175950 ~ 71194656 (-) False G743129
TU843644 lncRNA upstream 113939 71185021 ~ 71194656 (-) True G743129
XM_036986110.1 mRNA downstream 4264 71020813 ~ 71066370 (-) False LOC110530472
XM_036986108.1 mRNA downstream 4594 71020813 ~ 71066040 (-) False LOC110530472
XM_036986112.1 mRNA downstream 4685 71020813 ~ 71065949 (-) False LOC110530472
XM_036986113.1 mRNA downstream 4685 71020813 ~ 71065949 (-) False LOC110530472
XM_036986109.1 mRNA downstream 4691 71020813 ~ 71065943 (-) False LOC110530472
XM_036986114.1 mRNA upstream 21085 71092167 ~ 71112023 (-) False LOC110530974
XM_036986116.1 mRNA upstream 21085 71092167 ~ 71112023 (-) False LOC110530974
XM_036986115.1 mRNA upstream 21085 71092167 ~ 71112024 (-) True LOC110530974
XR_005052941.1 mRNA upstream 323017 71394099 ~ 71396616 (-) True LOC118965547
XM_021613574.2 mRNA upstream 363262 71434344 ~ 71436737 (-) True LOC110530476
TU842800 other downstream 228177 70835358 ~ 70842457 (-) True G742383
TU842419 other downstream 544683 70519387 ~ 70525951 (-) False G742038
TU842204 other downstream 870356 70198911 ~ 70200278 (-) True LOC110530449
TU842116 other downstream 909796 70151807 ~ 70160838 (-) True LOC110530971
TU841504 other downstream 1287340 69782289 ~ 69783294 (-) True G741177
TU843950 other upstream 604363 71675445 ~ 71675785 (-) True G743421
TU843976 other upstream 607603 71678685 ~ 71680277 (-) False G743447
TU843988 other upstream 614108 71685190 ~ 71715625 (-) False G743450
TU843989 other upstream 614108 71685190 ~ 71697479 (-) False G743450
TU843991 other upstream 614108 71685190 ~ 71715600 (-) False G743450

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
mexican tetra (Astyanax mexicanus) TU467094 True 549 lncRNA 0.46 1 NW_019172938.1 1416936 ~ 1417484 (-)