RNA id: TU843620


Basic Information

Item Value
RNA id TU843620
length 210
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G743110
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 71133762 ~ 71133971 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cttatttacaatgacagcctagcccAGCCAAAACCGGTctacgctgggccaaatgtgcaccGCCTTATTTGACtctcaatcacagccggatgtgatgcaggcTAGATTCAGCCTGAACCAgagactgcagtgacacctcttgtactgagatgtagtgccttagaccactgcaccactctcgagccccataatgacaataacccataatga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU843618 lncRNA downstream 801 71132688 ~ 71132961 (-) True G743108
TU843593 lncRNA downstream 54764 71078795 ~ 71078998 (-) True G743083
TU843527 lncRNA downstream 67753 71043851 ~ 71066009 (-) True LOC110530472
TU843508 lncRNA downstream 152279 70976364 ~ 70981483 (-) True G742999
TU842843 lncRNA downstream 226469 70906902 ~ 70907293 (-) True G742425
TU843640 lncRNA upstream 41979 71175950 ~ 71194656 (-) False G743129
TU843644 lncRNA upstream 51050 71185021 ~ 71194656 (-) True G743129
TU843796 lncRNA upstream 274958 71408929 ~ 71412253 (-) True G743275
TU843828 lncRNA upstream 311750 71445721 ~ 71446678 (-) True G743302
TU843923 lncRNA upstream 446504 71580475 ~ 71638545 (-) True G743394
XM_036986115.1 mRNA downstream 21738 71092167 ~ 71112024 (-) True LOC110530974
XM_036986114.1 mRNA downstream 21739 71092167 ~ 71112023 (-) False LOC110530974
XM_036986116.1 mRNA downstream 21739 71092167 ~ 71112023 (-) False LOC110530974
XM_021613564.2 mRNA downstream 50496 71020813 ~ 71083266 (-) False LOC110530472
XR_005052941.1 mRNA upstream 260128 71394099 ~ 71396616 (-) True LOC118965547
XM_021613574.2 mRNA upstream 300373 71434344 ~ 71436737 (-) True LOC110530476
XM_036986121.1 mRNA upstream 327112 71461083 ~ 71462587 (-) True zgc:92591
XM_021613581.2 mRNA upstream 507459 71641430 ~ 71649971 (-) True LOC110530478
XM_021613583.2 mRNA upstream 519780 71653751 ~ 71658928 (-) False abcb8
TU843586 other downstream 62680 71070634 ~ 71071082 (-) True G743076
TU842800 other downstream 291305 70835358 ~ 70842457 (-) True G742383
TU842419 other downstream 607811 70519387 ~ 70525951 (-) False G742038
TU842204 other downstream 933484 70198911 ~ 70200278 (-) True LOC110530449
TU842116 other downstream 972924 70151807 ~ 70160838 (-) True LOC110530971
TU843950 other upstream 541474 71675445 ~ 71675785 (-) True G743421
TU843976 other upstream 544714 71678685 ~ 71680277 (-) False G743447
TU843988 other upstream 551219 71685190 ~ 71715625 (-) False G743450
TU843989 other upstream 551219 71685190 ~ 71697479 (-) False G743450
TU843991 other upstream 551219 71685190 ~ 71715600 (-) False G743450

Expression Profile