RNA id: XM_021616931.2



Basic Information


Item Value
RNA id XM_021616931.2
length 510
RNA type mRNA
GC content 0.41
exon number 4
gene id LOC110532786
representative False

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 70754295 ~ 70759695 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TGTGCCCATTTATGTTAAAGGAAGTCTGCATGACTGTTTCCGGTTCTGCTTGTTGCGCATTCTTTCCGCTTTTTCACGAACTGAAGGAAACACTACAAAAAGAAACATGAGTAAAGCACACCCACCAGAGTTGAAAAAGTTCATGGACAAGAAGCTTTCTCTGAAGCTGAACGGTGGCAGGCAGGTCCAAGGAGTCCTGCGAGGTTTTGACCCCTTCATGAACTTGGTGATGGATGATTGCTTGGAGATGGCCCCTGGGGGAATACAGAACACCATAGGCATGGTGGTAATCAGAGGAAACAGCATCATCATGTTGGAGGCACTTGAGAGAGTATGAGGGCGGGGATGACAGAACTGCTTGAAAGAAGTGGAATAATGGCCATTACACTTTTTATGTAATTTCCTTTTTTCCTGTTGATAGATTATGTATTTGATACGTTTAGACAGATATTTCAGttggaaatgttttaattttgAAATCTTGTGAATAAACTgggtattttgttttta

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU951986 lncRNA upstream 6638 70744286 ~ 70747657 (+) True LOC110532787
TU951898 lncRNA upstream 103369 70645274 ~ 70650926 (+) True G836833
TU951890 lncRNA upstream 121138 70632877 ~ 70633157 (+) True G836826
TU951542 lncRNA upstream 144256 70609802 ~ 70610039 (+) True G836550
TU951539 lncRNA upstream 146418 70607559 ~ 70607877 (+) True G836547
TU952058 lncRNA downstream 125035 70884728 ~ 70885693 (+) True G836966
TU952062 lncRNA downstream 128641 70888334 ~ 70889451 (+) True G836969
TU952116 lncRNA downstream 222354 70982047 ~ 70982645 (+) True G837018
TU952439 lncRNA downstream 355899 71115592 ~ 71120982 (+) True G837275
TU952442 lncRNA downstream 357512 71117205 ~ 71118343 (+) True G837278
XM_036988896.1 mRNA upstream 144 70750838 ~ 70754151 (+) True LOC118966110
XM_036988894.1 mRNA upstream 4966 70727895 ~ 70749329 (+) False LOC110532787
XM_036988895.1 mRNA upstream 4966 70727895 ~ 70749329 (+) False LOC110532787
XM_036988885.1 mRNA upstream 233264 70510123 ~ 70521031 (+) False kif3b
XM_036988886.1 mRNA upstream 233264 70510123 ~ 70521031 (+) False kif3b
XM_021616930.2 mRNA downstream 294 70759987 ~ 70775436 (+) False LOC110532785
XM_036988898.1 mRNA downstream 530 70760223 ~ 70775436 (+) True LOC110532785
XM_021616928.2 mRNA downstream 18648 70778341 ~ 70784847 (+) True fam50a
XM_036988899.1 mRNA downstream 40491 70800184 ~ 70829472 (+) False LOC110532780
XM_036988900.1 mRNA downstream 40491 70800184 ~ 70829472 (+) True LOC110532780
TU951291 other upstream 544660 70208678 ~ 70209635 (+) True G836374
TU951181 other upstream 721068 70032992 ~ 70033227 (+) True G836274
TU950024 other upstream 1386507 69287276 ~ 69367788 (+) True G835268
TU950033 other upstream 1487821 69261171 ~ 69266474 (+) True LOC110532770
TU950020 other upstream 1509817 69242214 ~ 69244478 (+) True G835266
TU952565 other downstream 473093 71232786 ~ 71233424 (+) True G837369
TU952646 other downstream 621466 71381159 ~ 71381658 (+) False znf335
TU952642 other downstream 624206 71383899 ~ 71384463 (+) True znf335
TU952680 other downstream 702742 71462435 ~ 71466023 (+) True lamtor5
TU952785 other downstream 868155 71627848 ~ 71639759 (+) True G837570

Expression Profile